Manihot esculenta      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 59 genes.  Reviewed (0 or Unreviewed (59

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mae-1488
MANES_01G066400
A0A2C9WKZ1
MANES_01G066400
2
LLPS-Mae-1272
MANES_01G134400
A0A2C9WKM0
MANES_01G134400
3
LLPS-Mae-1248
MANES_01G169300
A0A2C9WLL9
MANES_01G169300
4
LLPS-Mae-2095
MANES_01G182100
A0A2C9WN52
MANES_01G182100
5
LLPS-Mae-2423
MANES_01G203400
A0A2C9WML3
MANES_01G203400
6
LLPS-Mae-0585
MANES_01G220300
A0A2C9WQN9
MANES_01G220300
7
LLPS-Mae-0393
MANES_01G232500
A0A2C9WPX0
MANES_01G232500
8
LLPS-Mae-2417
MANES_02G029400
A0A2C9WAC5
MANES_02G029400
9
LLPS-Mae-0937
MANES_02G082200
A0A2C9WC25
MANES_02G082200
10
LLPS-Mae-1732
MANES_02G090600
A0A2C9WEV7
MANES_02G090600
11
LLPS-Mae-1244
MANES_02G110800
A0A2C9WCW8
MANES_02G110800
12
LLPS-Mae-1583
MANES_02G120400
A0A2C9WD43
MANES_02G120400
13
LLPS-Mae-1832
MANES_02G166400
A0A251LJ82
MANES_02G166400
14
LLPS-Mae-1899
MANES_03G007600
A0A2C9W3F3
MANES_03G007600
15
LLPS-Mae-1659
MANES_03G015600
A0A2C9W3M6
MANES_03G015600
16
LLPS-Mae-0667
MANES_03G046500
A0A251L6V2
MANES_03G046500
17
LLPS-Mae-0844
MANES_03G159500
A0A2C9W7Y5
MANES_03G159500
18
LLPS-Mae-2527
MANES_03G189500
A0A2C9W8Y0
MANES_03G189500
19
LLPS-Mae-1741
MANES_03G195300
A0A2C9W944
MANES_03G195300
20
LLPS-Mae-1036
MANES_03G196900
A0A2C9WAQ7
MANES_03G196900
21
LLPS-Mae-0987
MANES_03G197500
A0A2C9WBD3
MANES_03G197500
22
LLPS-Mae-2637
MANES_04G040300
A0A2C9VZG5
MANES_04G040300
23
LLPS-Mae-0505
MANES_04G066600
A0A251L1V5
MANES_04G066600
24
LLPS-Mae-0587
MANES_04G069900
A0A2C9W0D7
MANES_04G069900
25
LLPS-Mae-2587
MANES_05G062400
A0A2C9VTV0
MANES_05G062400
26
LLPS-Mae-0795
MANES_06G009200
A0A2C9VLP0
MANES_06G009200
27
LLPS-Mae-0109
MANES_06G040900
A0A2C9VPX2
MANES_06G040900
28
LLPS-Mae-2601
MANES_06G055100
A0A2C9VN87
MANES_06G055100
29
LLPS-Mae-0915
MANES_06G129500
A0A2C9VST8
MANES_06G129500
30
LLPS-Mae-0105
MANES_06G159600
A0A251KQB0
MANES_06G159600
31
LLPS-Mae-1189
MANES_07G090500
A0A2C9VL87
MANES_07G090500
32
LLPS-Mae-1174
MANES_08G098200
A0A2C9VEX1
MANES_08G098200
33
LLPS-Mae-2207
MANES_08G153800
A0A2C9VGK2
MANES_08G153800
34
LLPS-Mae-0884
MANES_08G163100
A0A2C9VJ81
MANES_08G163100
35
LLPS-Mae-0014
MANES_09G061900
A0A2C9V8D4
MANES_09G061900
36
LLPS-Mae-2461
MANES_09G072000
A0A251K595
MANES_09G072000
37
LLPS-Mae-1848
MANES_09G075000
A0A2C9VA56
MANES_09G075000
38
LLPS-Mae-0957
MANES_09G148400
A0A2C9VAY9
MANES_09G148400
39
LLPS-Mae-0800
MANES_09G150900
A0A2C9VC96
MANES_09G150900
40
LLPS-Mae-1303
MANES_09G171000
A0A2C9VBK3
MANES_09G171000
41
LLPS-Mae-0284
MANES_10G029600
A0A2C9V2W9
MANES_10G029600
42
LLPS-Mae-0650
MANES_10G104400
A0A251K0W9
MANES_10G104400
43
LLPS-Mae-1914
MANES_10G132900
A0A2C9V5R2
MANES_10G132900
44
LLPS-Mae-0924
MANES_11G057400
A0A2C9UYX4
MANES_11G057400
45
LLPS-Mae-1280
MANES_11G074800
A0A2C9UYZ8
MANES_11G074800
46
LLPS-Mae-1355
MANES_11G133200
A0A2C9V282
MANES_11G133200
47
LLPS-Mae-2052
MANES_12G020700
A0A2C9UT07
MANES_12G020700
48
LLPS-Mae-0114
MANES_12G068900
A0A2C9UVR2
MANES_12G068900
49
LLPS-Mae-1939
MANES_12G131600
A0A2C9UWA2
MANES_12G131600
50
LLPS-Mae-0169
MANES_13G122500
A0A2C9UR54
MANES_13G122500
51
LLPS-Mae-1414
MANES_13G137500
A0A2C9URM6
MANES_13G137500
52
LLPS-Mae-1891
MANES_14G164500
A0A2C9UM93
MANES_14G164500
53
LLPS-Mae-2060
MANES_14G168500
A0A251JE54
MANES_14G168500
54
LLPS-Mae-0193
MANES_15G059200
A0A251J343
MANES_15G059200
55
LLPS-Mae-1763
MANES_15G107000
A0A2C9UEP6
MANES_15G107000
56
LLPS-Mae-2008
MANES_16G131000
A0A251J1W1
MANES_16G131000
57
LLPS-Mae-0407
MANES_17G032800
A0A2C9U5C6
MANES_17G032800
58
LLPS-Mae-0687
MANES_18G005100
A0A2C9U053
MANES_18G005100
59
LLPS-Mae-0678
MANES_18G093400
A0A2C9U1T2
MANES_18G093400