Glycine max      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 60 genes.  Reviewed (0 or Unreviewed (60

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Glm-1358
GLYMA_13G229200
2
LLPS-Glm-0674
GLYMA_15G149300
A0A0R0GAQ3
100775526
3
LLPS-Glm-0726
GLYMA_16G036700
I1MKX3
100775905
4
LLPS-Glm-0663
GLYMA_20G101200
C6T7E2
100776722
5
LLPS-Glm-2584
GLYMA_08G051400
I1KQH7
100777152
6
LLPS-Glm-0514
GLYMA_04G255700
I1JZD4
100779915
7
LLPS-Glm-1110
GLYMA_15G253800
K7MDW5
100780515
8
LLPS-Glm-2251
GLYMA_17G026500
I1MRI4
100780736
9
LLPS-Glm-1492
GLYMA_01G214100
K7K541
100784130
10
LLPS-Glm-2267
GLYMA_01G229400
I1JAI4
100784306
11
LLPS-Glm-2062
GLYMA_08G211400
I1KVD4
100785358
12
LLPS-Glm-2426
GLYMA_05G049300
I1K0D0
100786173
13
LLPS-Glm-0598
GLYMA_02G009200
A0A0R0KQN1
100788046
14
LLPS-Glm-1334
GLYMA_14G049700
I1M7I6
100788171
15
LLPS-Glm-1104
GLYMA_18G045800
I1MZJ7
100788964
16
LLPS-Glm-0718
GLYMA_06G115500
I1KAC6
100789749
17
LLPS-Glm-1354
GLYMA_19G160200
I1N9L1
100791082
18
LLPS-Glm-0673
GLYMA_14G068500
I1M856
100792397
19
LLPS-Glm-1756
GLYMA_16G101500
K7MGF3
100792777
20
LLPS-Glm-0097
GLYMA_14G131900
K7M6I8
100792927
21
LLPS-Glm-2482
GLYMA_02G146600
I1JF97
100792985
22
LLPS-Glm-0572
GLYMA_20G106400
A0A0R0EK66
100793225
23
LLPS-Glm-2300
GLYMA_18G243900
C6T9S5
100793888
24
LLPS-Glm-0949
GLYMA_19G211100
I1NB59
100796900
25
LLPS-Glm-1759
GLYMA_20G126000
I1NFU9
100797261
26
LLPS-Glm-0664
GLYMA_02G006400
I1JB93
100798791
27
LLPS-Glm-1121
GLYMA_10G133700
I1LAQ3
100800213
28
LLPS-Glm-0230
GLYMA_01G175100
I1J8V4
100800903
29
LLPS-Glm-2158
GLYMA_12G005900
I1LNT7
100800982
30
LLPS-Glm-0608
GLYMA_15G048700
I1MDR5
100801229
31
LLPS-Glm-0987
GLYMA_20G223300
I1NIN5
100801352
32
LLPS-Glm-0596
GLYMA_11G092200
I1LII4
100802384
33
LLPS-Glm-2654
GLYMA_06G148700
I1KBE2
100802446
34
LLPS-Glm-2089
GLYMA_10G284200
K7LLZ3
100804117
35
LLPS-Glm-0000
GLYMA_05G117600
I1K2P0
100804370
36
LLPS-Glm-1438
GLYMA_08G172000
I1KU45
100804778
37
LLPS-Glm-0433
GLYMA_07G224200
I1KMB5
100805487
38
LLPS-Glm-0206
GLYMA_14G200400
C6TN69
100805822
39
LLPS-Glm-0193
GLYMA_15G066000
I1ME85
100806356
40
LLPS-Glm-2362
GLYMA_08G366200
A0A0R0IXL2
100807978
41
LLPS-Glm-2148
GLYMA_02G281300
I1JIZ2
100808568
42
LLPS-Glm-1075
GLYMA_04G189600
I1JXD2
100808961
43
LLPS-Glm-2041
GLYMA_08G133900
I1KSZ2
100809403
44
LLPS-Glm-2399
GLYMA_20G113200
I1NFF9
100809519
45
LLPS-Glm-0157
GLYMA_11G054100
I1LHC7
100809840
46
LLPS-Glm-0224
GLYMA_12G059700
I1LQL7
100810238
47
LLPS-Glm-0958
GLYMA_17G224100
I1MX63
100812657
48
LLPS-Glm-0410
GLYMA_15G007100
I1MCE8
100814404
49
LLPS-Glm-0636
GLYMA_04G236800
I1JYT2
100815393
50
LLPS-Glm-0159
GLYMA_11G141500
I1LK48
100817317
51
LLPS-Glm-2032
GLYMA_15G005900
I1MCD5
100818114
52
LLPS-Glm-2127
GLYMA_01G162000
C6TAB9
GLYMA_01G162000
53
LLPS-Glm-0843
GLYMA_02G226100
I1JHC2
GLYMA_02G226100
54
LLPS-Glm-1239
GLYMA_03G253300
I1JRV0
GLYMA_03G253300
55
LLPS-Glm-2590
GLYMA_07G252700
A0A0R0J834
GLYMA_07G252700
56
LLPS-Glm-1202
GLYMA_08G050900
I1KQG7
GLYMA_08G050900
57
LLPS-Glm-0569
GLYMA_08G265300
I1KWX3
GLYMA_08G265300
58
LLPS-Glm-0689
GLYMA_10G123200
A0A0R0HSC1
GLYMA_10G123200
59
LLPS-Glm-2455
GLYMA_19G072100
I1N783
GLYMA_19G072100
60
LLPS-Glm-2986
GLYMA_20G236800
A0A0R0ERJ1
GLYMA_20G236800