Gasterosteus aculeatus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 108 genes.  Reviewed (0 or Unreviewed (108

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Gaa-0019
ENSGACG00000017430.1
G3PZJ2
2
LLPS-Gaa-0087
ENSGACG00000010993.1
G3PAD5
3
LLPS-Gaa-0118
ENSGACG00000002518.1
G3ND96
4
LLPS-Gaa-0119
ENSGACG00000011733.1
G3PDD4
5
LLPS-Gaa-0131
ENSGACG00000001042.1
G3N7S2
6
LLPS-Gaa-0198
ENSGACG00000000543.1
G3N5Z6
7
LLPS-Gaa-0207
ENSGACG00000004477.1
G3NKU2
8
LLPS-Gaa-0221
ENSGACG00000016851.1
G3PXC1
9
LLPS-Gaa-0237
ENSGACG00000008627.1
G3P1C7
10
LLPS-Gaa-0240
ENSGACG00000002743.1
G3NE79
11
LLPS-Gaa-0246
ENSGACG00000012975.1
G3PHS5
12
LLPS-Gaa-0309
ENSGACG00000019682.2
G3Q7Z9
13
LLPS-Gaa-0314
ENSGACG00000010787.1
G3P9P8
14
LLPS-Gaa-0365
ENSGACG00000011615.1
G3PCP4
15
LLPS-Gaa-0370
ENSGACG00000004981.1
G3NMP8
16
LLPS-Gaa-0398
ENSGACG00000003105.1
G3NFF6
17
LLPS-Gaa-0409
ENSGACG00000004834.2
G3NM28
18
LLPS-Gaa-0425
ENSGACG00000001855.2
G3NAR2
19
LLPS-Gaa-0489
ENSGACG00000005092.1
G3NN41
20
LLPS-Gaa-0547
ENSGACG00000008607.1
G3P1B5
21
LLPS-Gaa-0626
ENSGACG00000006184.1
G3NS65
22
LLPS-Gaa-0690
ENSGACG00000004781.1
G3NLW4
23
LLPS-Gaa-0697
ENSGACG00000016022.1
G3PU60
24
LLPS-Gaa-0738
ENSGACG00000006925.1
G3NVA0
25
LLPS-Gaa-0739
ENSGACG00000003629.1
G3NHE6
26
LLPS-Gaa-0763
ENSGACG00000003763.1
G3NHY5
27
LLPS-Gaa-0767
ENSGACG00000000884.1
G3N781
28
LLPS-Gaa-0806
ENSGACG00000011893.1
G3PDS4
29
LLPS-Gaa-0807
ENSGACG00000015358.1
G3PRL9
30
LLPS-Gaa-0818
ENSGACG00000004681.1
G3NLI5
31
LLPS-Gaa-0836
ENSGACG00000019335.1
G3Q6Q8
32
LLPS-Gaa-0867
ENSGACG00000002389.1
G3NCR2
33
LLPS-Gaa-0877
ENSGACG00000014910.1
G3PPZ3
34
LLPS-Gaa-0929
ENSGACG00000019174.1
G3Q648
35
LLPS-Gaa-0964
ENSGACG00000006270.3
G3NSH7
36
LLPS-Gaa-1002
ENSGACG00000002167.2
G3NBX9
37
LLPS-Gaa-1049
ENSGACG00000020631.2
G3QBM3
38
LLPS-Gaa-1067
ENSGACG00000015581.1
G3PSG8
39
LLPS-Gaa-1098
ENSGACG00000005531.1
G3NPT1
40
LLPS-Gaa-1106
ENSGACG00000014500.1
G3PNF0
41
LLPS-Gaa-1138
ENSGACG00000017855.1
G3Q144
42
LLPS-Gaa-1166
ENSGACG00000002899.1
G3NEP4
43
LLPS-Gaa-1216
ENSGACG00000002034.1
G3NBF7
44
LLPS-Gaa-1232
ENSGACG00000007581.1
G3NXK6
45
LLPS-Gaa-1287
ENSGACG00000020278.1
G3QA81
46
LLPS-Gaa-1321
ENSGACG00000020516.2
G3QB62
47
LLPS-Gaa-1383
ENSGACG00000012311.1
G3PFA2
48
LLPS-Gaa-1384
ENSGACG00000008504.1
G3P105
49
LLPS-Gaa-1387
ENSGACG00000009848.1
G3P5Z1
50
LLPS-Gaa-1392
ENSGACG00000014092.1
G3PLX6
51
LLPS-Gaa-1460
ENSGACG00000011094.1
G3PAP2
52
LLPS-Gaa-1463
ENSGACG00000015032.1
G3PQE4
53
LLPS-Gaa-1482
ENSGACG00000018517.1
G3Q3M8
54
LLPS-Gaa-1526
ENSGACG00000001061.1
G3N7T6
55
LLPS-Gaa-1556
ENSGACG00000011955.1
G3PDZ3
56
LLPS-Gaa-1560
ENSGACG00000010423.1
G3P851
57
LLPS-Gaa-1580
ENSGACG00000014326.1
G3PMR9
58
LLPS-Gaa-1583
ENSGACG00000011048.1
G3PAI7
59
LLPS-Gaa-1660
ENSGACG00000012434.1
G3PFS1
60
LLPS-Gaa-1717
ENSGACG00000007101.1
G3NVP9
61
LLPS-Gaa-1720
ENSGACG00000005202.1
G3NNH1
62
LLPS-Gaa-1752
ENSGACG00000000166.3
G3N4K0
63
LLPS-Gaa-1787
ENSGACG00000011474.1
G3PC73
64
LLPS-Gaa-1803
ENSGACG00000000448.2
G3N5K7
65
LLPS-Gaa-1823
ENSGACG00000015255.1
G3PR91
66
LLPS-Gaa-1863
ENSGACG00000011824.1
G3PDF9
67
LLPS-Gaa-1876
ENSGACG00000016495.1
G3PVY7
68
LLPS-Gaa-1932
ENSGACG00000019578.1
G3Q7M6
69
LLPS-Gaa-2089
ENSGACG00000016004.1
G3PU38
70
LLPS-Gaa-2127
ENSGACG00000008271.1
G3P006
71
LLPS-Gaa-2155
ENSGACG00000005986.1
G3NRE8
72
LLPS-Gaa-2342
ENSGACG00000006030.1
G3NRM6
73
LLPS-Gaa-2345
ENSGACG00000008839.1
G3P253
74
LLPS-Gaa-2394
ENSGACG00000011531.1
G3PCC8
75
LLPS-Gaa-2453
ENSGACG00000017591.1
G3Q061
76
LLPS-Gaa-2472
ENSGACG00000010226.1
G3P7D1
77
LLPS-Gaa-2609
ENSGACG00000011591.2
G3PCM8
78
LLPS-Gaa-2691
ENSGACG00000000970.1
G3N7H2
79
LLPS-Gaa-2698
ENSGACG00000016088.1
G3PUD7
80
LLPS-Gaa-2727
ENSGACG00000020621.1
G3QBL0
81
LLPS-Gaa-2855
ENSGACG00000009838.1
G3P5Y3
82
LLPS-Gaa-2858
ENSGACG00000009220.1
G3P3K2
83
LLPS-Gaa-2872
ENSGACG00000015486.2
G3PS49
84
LLPS-Gaa-2902
ENSGACG00000007288.1
G3NWF6
85
LLPS-Gaa-2915
ENSGACG00000017976.1
G3Q1K0
86
LLPS-Gaa-2942
ENSGACG00000014901.1
G3PPY3
87
LLPS-Gaa-3011
ENSGACG00000004038.1
G3NJ18
88
LLPS-Gaa-3058
ENSGACG00000019870.1
G3Q8P2
89
LLPS-Gaa-3065
ENSGACG00000003232.1
G3NFY0
90
LLPS-Gaa-3122
ENSGACG00000013538.1
G3PJW4
91
LLPS-Gaa-3420
ENSGACG00000006824.1
G3NUN2
92
LLPS-Gaa-3504
ENSGACG00000006627.2
G3NTV6
93
LLPS-Gaa-3561
ENSGACG00000003367.1
G3NGF0
94
LLPS-Gaa-3686
ENSGACG00000007842.1
G3NYT4
95
LLPS-Gaa-3831
ENSGACG00000016604.1
G3PWD0
96
LLPS-Gaa-3880
ENSGACG00000013054.1
G3PI52
97
LLPS-Gaa-3969
ENSGACG00000020376.2
G3QAL8
98
LLPS-Gaa-4024
ENSGACG00000000826.1
G3N6Z3
99
LLPS-Gaa-0337
ENSGACG00000006796.1
G3NUP3
AGO2
100
LLPS-Gaa-3059
ENSGACG00000013328.2
G3PJ42
ALYREF
101
LLPS-Gaa-0474
ENSGACG00000013990.1
G3PLJ4
CDKL5 (1 of many)
102
LLPS-Gaa-3527
ENSGACG00000008492.1
G3P0V9
EZH1
103
LLPS-Gaa-3050
ENSGACG00000012410.1
G3PFN6
FGFR1
104
LLPS-Gaa-2890
ENSGACG00000008525.1
G3P0Z7
hif-1a
105
LLPS-Gaa-3374
ENSGACG00000011261.1
G3PBB1
RNPS1
106
LLPS-Gaa-0907
ENSGACG00000007059.1
G3NVJ4
SPOP
107
LLPS-Gaa-0686
ENSGACG00000013650.1
G3PKA8
SRSF10 (1 of many)
108
LLPS-Gaa-0792
ENSGACG00000010632.1
G3P8Z0
U2AF2