Gaeumannomyces graminis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 33 genes.  Reviewed (0 or Unreviewed (33

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Gag-0430
GGTG_00170
J3NFX6
20340628
2
LLPS-Gag-0018
GGTG_00287
J3NG95
20340745
3
LLPS-Gag-0964
GGTG_00338
J3NGE7
20340796
4
LLPS-Gag-0335
GGTG_01114
J3NIN0
20341572
5
LLPS-Gag-0330
GGTG_01278
J3NJ45
20341736
6
LLPS-Gag-1408
GGTG_01914
J3NKX3
20342372
7
LLPS-Gag-0982
GGTG_02719
J3NN61
20343177
8
LLPS-Gag-0387
GGTG_02735
J3NN77
20343193
9
LLPS-Gag-1246
GGTG_03748
J3NR43
20344206
10
LLPS-Gag-1125
GGTG_04966
J3NUL0
20345424
11
LLPS-Gag-0236
GGTG_05389
J3NVS6
20345847
12
LLPS-Gag-0899
GGTG_06078
J3NXS3
20346536
13
LLPS-Gag-0658
GGTG_06167
J3NY12
20346625
14
LLPS-Gag-1216
GGTG_06684
J3NZI6
20347142
15
LLPS-Gag-0342
GGTG_06797
J3NZV0
20347255
16
LLPS-Gag-1077
GGTG_07980
J3P391
20348438
17
LLPS-Gag-0549
GGTG_08089
J3P3K3
20348547
18
LLPS-Gag-1609
GGTG_08551
J3P4W5
20349009
19
LLPS-Gag-0434
GGTG_08693
J3P5A4
20349151
20
LLPS-Gag-0080
GGTG_08829
J3P5N9
20349287
21
LLPS-Gag-1367
GGTG_09369
J3P772
20349827
22
LLPS-Gag-0265
GGTG_09742
J3P8A8
20350200
23
LLPS-Gag-1086
GGTG_10243
J3P9R7
20350701
24
LLPS-Gag-0841
GGTG_10260
J3P9T6
20350718
25
LLPS-Gag-1638
GGTG_10840
J3PBG7
20351298
26
LLPS-Gag-0210
GGTG_10852
J3PBI0
20351310
27
LLPS-Gag-1046
GGTG_11469
J3PDA1
20351927
28
LLPS-Gag-0769
GGTG_11798
J3PE75
20352256
29
LLPS-Gag-0490
GGTG_12016
J3PET7
20352474
30
LLPS-Gag-0441
GGTG_12870
J3PH90
20353328
31
LLPS-Gag-1338
GGTG_12871
J3PH91
20353329
32
LLPS-Gag-0686
GGTG_12881
J3PHA2
20353339
33
LLPS-Gag-0060
GGTG_14349
J3PL97
20354807