Fukomys damarensis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 115 genes.  Reviewed (0 or Unreviewed (115

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Fud-0148
ENSFDAG00000016030.1
2
LLPS-Fud-0336
ENSFDAG00000012735.1
3
LLPS-Fud-0375
ENSFDAG00000012646.1
4
LLPS-Fud-0754
ENSFDAG00000020266.1
5
LLPS-Fud-0992
ENSFDAG00000017039.1
6
LLPS-Fud-1664
ENSFDAG00000002080.1
7
LLPS-Fud-1672
ENSFDAG00000009596.1
8
LLPS-Fud-1737
ENSFDAG00000006422.1
9
LLPS-Fud-2327
ENSFDAG00000015173.1
10
LLPS-Fud-2343
ENSFDAG00000009020.1
11
LLPS-Fud-3357
ENSFDAG00000019517.1
12
LLPS-Fud-4061
ENSFDAG00000017999.1
13
LLPS-Fud-0570
ENSFDAG00000021458.1
A0A091E6E9
H920_00290
14
LLPS-Fud-0708
ENSFDAG00000011011.1
A0A091E4R4
H920_00299
15
LLPS-Fud-0957
ENSFDAG00000007332.1
A0A091EPN9
H920_00823
16
LLPS-Fud-1893
ENSFDAG00000003819.1
A0A091E378
H920_01442
17
LLPS-Fud-0757
ENSFDAG00000011264.1
A0A091DWG1
H920_02101
18
LLPS-Fud-2894
ENSFDAG00000021070.1
A0A091E0U6
H920_02296
19
LLPS-Fud-0631
ENSFDAG00000007552.1
A0A091EL78
H920_02319
20
LLPS-Fud-0872
ENSFDAG00000018610.1
A0A091E114
H920_02417
21
LLPS-Fud-2661
ENSFDAG00000001213.1
A0A091DZ69
H920_02942
22
LLPS-Fud-1017
ENSFDAG00000020696.1
A0A091EHF0
H920_03583
23
LLPS-Fud-1795
ENSFDAG00000012353.1
A0A091DUI6
H920_03750
24
LLPS-Fud-0937
ENSFDAG00000000168.1
A0A091DWY9
H920_03818
25
LLPS-Fud-4341
ENSFDAG00000008236.1
A0A091DUR0
H920_03850
26
LLPS-Fud-1242
ENSFDAG00000012162.1
A0A091EGN6
H920_03969
27
LLPS-Fud-3101
ENSFDAG00000007470.1
A0A091DTU2
H920_04096
28
LLPS-Fud-0588
ENSFDAG00000021262.1
A0A091DSJ0
H920_04393
29
LLPS-Fud-0961
ENSFDAG00000018576.1
A0A091DMJ1
H920_05252
30
LLPS-Fud-1060
ENSFDAG00000010594.1
A0A091ECR6
H920_05294
31
LLPS-Fud-2180
ENSFDAG00000010443.1
A0A091DQ61
H920_05375
32
LLPS-Fud-1571
ENSFDAG00000007247.1
A0A091DR36
H920_05559
33
LLPS-Fud-2460
ENSFDAG00000013034.1
A0A091DLH0
H920_05590
34
LLPS-Fud-1705
ENSFDAG00000009163.1
A0A091EBX9
H920_05823
35
LLPS-Fud-0121
ENSFDAG00000020908.1
A0A091DK42
H920_06060
36
LLPS-Fud-1234
ENSFDAG00000019418.1
A0A091DPY2
H920_06099
37
LLPS-Fud-0716
ENSFDAG00000010678.1
A0A091DND5
H920_06567
38
LLPS-Fud-3205
ENSFDAG00000010863.1
A0A091DIG4
H920_06675
39
LLPS-Fud-1698
ENSFDAG00000017718.1
A0A091DKU9
H920_06886
40
LLPS-Fud-0557
ENSFDAG00000000793.1
A0A091DML8
H920_07039
41
LLPS-Fud-0488
ENSFDAG00000007364.1
A0A091DJZ2
H920_07148
42
LLPS-Fud-3074
ENSFDAG00000020215.1
A0A091DLH3
H920_07299
43
LLPS-Fud-0371
ENSFDAG00000018022.1
A0A091E6X0
H920_07754
44
LLPS-Fud-4029
ENSFDAG00000015028.1
A0A091DK23
H920_07782
45
LLPS-Fud-0055
ENSFDAG00000018308.1
A0A091DK72
H920_07905
46
LLPS-Fud-4318
ENSFDAG00000011468.1
A0A091DK54
H920_08028
47
LLPS-Fud-1536
ENSFDAG00000000501.1
A0A091DDA9
H920_08476
48
LLPS-Fud-0187
ENSFDAG00000018900.1
A0A091E4W7
H920_08478
49
LLPS-Fud-1715
ENSFDAG00000017510.1
A0A091DI83
H920_08603
50
LLPS-Fud-1356
ENSFDAG00000012548.1
A0A091DEU5
H920_09026
51
LLPS-Fud-2652
ENSFDAG00000009420.1
A0A091DG31
H920_09080
52
LLPS-Fud-0492
ENSFDAG00000012140.1
A0A091DG45
H920_09343
53
LLPS-Fud-0523
ENSFDAG00000002617.1
A0A091E2A2
H920_09416
54
LLPS-Fud-1239
ENSFDAG00000011201.1
A0A091DFH4
H920_09552
55
LLPS-Fud-0863
ENSFDAG00000012706.1
A0A091DE69
H920_09700
56
LLPS-Fud-1818
ENSFDAG00000007838.1
A0A091D9H9
H920_09706
57
LLPS-Fud-0027
ENSFDAG00000020911.1
A0A091DF17
H920_09818
58
LLPS-Fud-0252
ENSFDAG00000018385.1
A0A091D9V7
H920_09862
59
LLPS-Fud-2849
ENSFDAG00000005964.1
A0A091D8S4
H920_10074
60
LLPS-Fud-2527
ENSFDAG00000010452.1
A0A091DDG6
H920_10083
61
LLPS-Fud-3379
ENSFDAG00000003523.1
A0A091DDQ8
H920_10271
62
LLPS-Fud-1756
ENSFDAG00000009833.1
A0A091DD55
H920_10299
63
LLPS-Fud-2762
ENSFDAG00000020250.1
A0A091DA19
H920_10686
64
LLPS-Fud-2655
ENSFDAG00000002634.1
A0A091DBB6
H920_10872
65
LLPS-Fud-1217
ENSFDAG00000004683.1
A0A091D8E5
H920_11239
66
LLPS-Fud-1271
ENSFDAG00000008620.1
A0A091D9M4
H920_11596
67
LLPS-Fud-1411
ENSFDAG00000004759.1
A0A091D6V7
H920_11777
68
LLPS-Fud-0759
ENSFDAG00000016390.1
A0A091D2B6
H920_12366
69
LLPS-Fud-2999
ENSFDAG00000013830.1
A0A091D2C7
H920_12381
70
LLPS-Fud-2558
ENSFDAG00000019634.1
A0A091D5G7
H920_12444
71
LLPS-Fud-1449
ENSFDAG00000002858.1
A0A091D6Y1
H920_12591
72
LLPS-Fud-3260
ENSFDAG00000020917.1
A0A091D4G4
H920_12693
73
LLPS-Fud-3440
ENSFDAG00000010681.1
A0A091D5S5
H920_12746
74
LLPS-Fud-0013
ENSFDAG00000004711.1
A0A091D5H0
H920_13028
75
LLPS-Fud-2800
ENSFDAG00000018381.1
A0A091D0B8
H920_13037
76
LLPS-Fud-2839
ENSFDAG00000011177.1
A0A091D5J6
H920_13053
77
LLPS-Fud-1731
ENSFDAG00000014858.1
A0A091D2X7
H920_13303
78
LLPS-Fud-2028
ENSFDAG00000014357.1
A0A091DQQ0
H920_13467
79
LLPS-Fud-4016
ENSFDAG00000012730.1
A0A091DQ73
H920_13628
80
LLPS-Fud-2164
ENSFDAG00000008092.1
A0A091DQ12
H920_13718
81
LLPS-Fud-2575
ENSFDAG00000007766.1
A0A091DP56
H920_14077
82
LLPS-Fud-1163
ENSFDAG00000009714.1
A0A091D1J9
H920_14186
83
LLPS-Fud-0401
ENSFDAG00000017723.1
A0A091DNE9
H920_14286
84
LLPS-Fud-0060
ENSFDAG00000002827.1
A0A091CZT2
H920_14337
85
LLPS-Fud-1032
ENSFDAG00000011562.1
A0A091DN68
H920_14341
86
LLPS-Fud-1463
ENSFDAG00000020833.1
A0A091CWR6
H920_14456
87
LLPS-Fud-0482
ENSFDAG00000003386.1
A0A091CYR2
H920_14733
88
LLPS-Fud-2240
ENSFDAG00000010890.1
A0A091D042
H920_14744
89
LLPS-Fud-0962
ENSFDAG00000009560.1
A0A091CVH8
H920_14843
90
LLPS-Fud-3073
ENSFDAG00000009535.1
A0A091DL34
H920_15099
91
LLPS-Fud-2059
ENSFDAG00000017777.1
A0A091CYC2
H920_15393
92
LLPS-Fud-1362
ENSFDAG00000021035.1
A0A091CUB3
H920_15442
93
LLPS-Fud-3094
ENSFDAG00000007186.1
A0A091CYF4
H920_15657
94
LLPS-Fud-1649
ENSFDAG00000013190.1
A0A091CWD5
H920_16179
95
LLPS-Fud-2496
ENSFDAG00000012809.1
A0A091CV86
H920_16624
96
LLPS-Fud-2293
ENSFDAG00000007597.1
A0A091CV55
H920_16648
97
LLPS-Fud-1113
ENSFDAG00000013365.1
A0A091DGD6
H920_16740
98
LLPS-Fud-4167
ENSFDAG00000019405.1
A0A091CTV2
H920_16746
99
LLPS-Fud-2367
ENSFDAG00000019128.1
A0A091CUD2
H920_17048
100
LLPS-Fud-3294
ENSFDAG00000021342.1
A0A091CTM1
H920_17341
101
LLPS-Fud-1655
ENSFDAG00000005694.1
A0A091CT56
H920_17451
102
LLPS-Fud-1348
ENSFDAG00000019637.1
A0A091DEA0
H920_17469
103
LLPS-Fud-0129
ENSFDAG00000014716.1
A0A091DEH8
H920_17529
104
LLPS-Fud-3230
ENSFDAG00000011546.1
A0A091CRS6
H920_17735
105
LLPS-Fud-4432
ENSFDAG00000018863.1
A0A091DCT5
H920_17997
106
LLPS-Fud-0104
ENSFDAG00000009573.1
A0A091CSQ1
H920_18098
107
LLPS-Fud-3882
ENSFDAG00000018560.1
A0A091CSK1
H920_18156
108
LLPS-Fud-2980
ENSFDAG00000011757.1
A0A091CLT2
H920_18912
109
LLPS-Fud-1892
ENSFDAG00000002423.1
A0A091CLG7
H920_18925
110
LLPS-Fud-1535
ENSFDAG00000012289.1
A0A091CPS6
H920_18949
111
LLPS-Fud-1985
ENSFDAG00000019034.1
A0A091CQ85
H920_19161
112
LLPS-Fud-3410
ENSFDAG00000000069.1
A0A091CME8
H920_19540
113
LLPS-Fud-0636
ENSFDAG00000013590.1
A0A091CNC7
H920_19575
114
LLPS-Fud-2314
ENSFDAG00000014925.1
A0A091CLN8
H920_20323
115
LLPS-Fud-1768
ENSFDAG00000019111.1
A0A091D5C2
H920_20533