Ficedula albicollis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 97 genes.  Reviewed (0 or Unreviewed (97

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Fia-0400
ENSFALG00000010502.1
U3K7E8
2
LLPS-Fia-0592
ENSFALG00000002358.1
U3JI49
3
LLPS-Fia-0697
ENSFALG00000011572.1
U3KAM5
4
LLPS-Fia-1326
ENSFALG00000000869.1
U3JDP8
5
LLPS-Fia-1538
ENSFALG00000011602.1
U3KAR1
6
LLPS-Fia-1658
ENSFALG00000002365.1
U3JI57
7
LLPS-Fia-1680
ENSFALG00000001368.1
U3JF85
8
LLPS-Fia-2324
ENSFALG00000011923.1
U3KBP1
9
LLPS-Fia-2403
ENSFALG00000002749.1
U3JJB1
10
LLPS-Fia-0314
ENSFALG00000002838.1
U3JJK4
AGO2
11
LLPS-Fia-0967
ENSFALG00000004165.1
U3JNI9
AKAP17A
12
LLPS-Fia-0326
ENSFALG00000011340.1
U3K9Y5
ANXA10
13
LLPS-Fia-1955
ENSFALG00000012565.1
U3KDM4
ANXA2
14
LLPS-Fia-2346
ENSFALG00000009250.1
U3K3P1
ARL6IP4
15
LLPS-Fia-3216
ENSFALG00000007034.1
U3JX48
ATR
16
LLPS-Fia-1809
ENSFALG00000003431.1
U3JLC0
BCAS2
17
LLPS-Fia-2051
ENSFALG00000001437.1
U3JFE5
C9orf78
18
LLPS-Fia-2899
ENSFALG00000000412.1
U3JCC2
CASC3
19
LLPS-Fia-1242
ENSFALG00000004760.1
U3JQA4
CCNL1
20
LLPS-Fia-1351
ENSFALG00000012688.1
U3KDY3
CDC5L
21
LLPS-Fia-2390
ENSFALG00000013320.1
U3KFU5
CDK1
22
LLPS-Fia-3184
ENSFALG00000009871.1
U3K5J1
CDK7
23
LLPS-Fia-1217
ENSFALG00000001337.1
U3JF41
CDK9
24
LLPS-Fia-3833
ENSFALG00000004310.1
U3JNY5
CDKL5
25
LLPS-Fia-1017
ENSFALG00000002878.1
U3JJQ0
CLK2
26
LLPS-Fia-1919
ENSFALG00000008359.1
U3K105
COP1
27
LLPS-Fia-0064
ENSFALG00000008847.1
U3K2H6
CSNK1A1
28
LLPS-Fia-1667
ENSFALG00000004502.1
U3JPK4
CTNNBL1
29
LLPS-Fia-0312
ENSFALG00000007947.1
U3JZT4
DDX46
30
LLPS-Fia-1135
ENSFALG00000008149.1
U3K0E5
DGCR8
31
LLPS-Fia-2049
ENSFALG00000011719.1
U3KB39
DNAJC17
32
LLPS-Fia-1556
ENSFALG00000000563.1
U3JCS8
DYRK3
33
LLPS-Fia-3741
ENSFALG00000006468.1
U3JVF6
EGF
34
LLPS-Fia-2826
ENSFALG00000005030.1
U3JR30
ERH
35
LLPS-Fia-0470
ENSFALG00000000715.1
U3JD86
EZH1
36
LLPS-Fia-1342
ENSFALG00000000336.1
U3JC39
FAM76B
37
LLPS-Fia-3779
ENSFALG00000008669.1
U3K1Y7
FAM83H
38
LLPS-Fia-1236
ENSFALG00000008718.1
U3K258
FANCD2
39
LLPS-Fia-0776
ENSFALG00000010491.1
U3K7E9
FANCI
40
LLPS-Fia-3725
ENSFALG00000013829.1
U3KHC7
FBXL18
41
LLPS-Fia-0609
ENSFALG00000006629.1
U3JVZ0
FGFR1
42
LLPS-Fia-0174
ENSFALG00000007503.1
U3JYI1
FYTTD1
43
LLPS-Fia-0295
ENSFALG00000005113.1
U3JRB6
GLI3
44
LLPS-Fia-0561
ENSFALG00000005346.1
U3JS27
GSK3B
45
LLPS-Fia-1491
ENSFALG00000003396.1
U3JLA1
HIF1A
46
LLPS-Fia-3799
ENSFALG00000009056.1
U3K342
HIPK2
47
LLPS-Fia-0006
ENSFALG00000009527.1
U3K4H6
HNRNPA2B1
48
LLPS-Fia-3750
ENSFALG00000012478.1
U3KDB7
HNRNPK
49
LLPS-Fia-3047
ENSFALG00000008492.1
U3K1E8
HSPH1
50
LLPS-Fia-1450
ENSFALG00000012046.1
U3KC23
ILF2
51
LLPS-Fia-1141
ENSFALG00000013695.1
U3KGZ0
ILF3
52
LLPS-Fia-2914
ENSFALG00000003218.1
U3JKP8
IVNS1ABP
53
LLPS-Fia-1452
ENSFALG00000002347.1
U3JI37
KPNA2
54
LLPS-Fia-3050
ENSFALG00000004146.1
U3JNG8
LUC7L
55
LLPS-Fia-1755
ENSFALG00000011765.1
U3KB77
NONO
56
LLPS-Fia-0716
ENSFALG00000006216.1
U3JUN1
NSRP1
57
LLPS-Fia-2493
ENSFALG00000000621.1
U3JCY7
NUAK2
58
LLPS-Fia-2636
ENSFALG00000012897.1
U3KEK9
OGG1
59
LLPS-Fia-0666
ENSFALG00000014524.1
U3KJD5
P2RY12
60
LLPS-Fia-0294
ENSFALG00000003319.1
U3JL18
PABPN1L
61
LLPS-Fia-0840
ENSFALG00000013105.1
U3KF73
PLRG1
62
LLPS-Fia-2513
ENSFALG00000006181.1
U3JUK0
PNN
63
LLPS-Fia-3397
ENSFALG00000000914.1
U3JDU5
PPIG
64
LLPS-Fia-2620
ENSFALG00000012084.1
U3KC60
PRPF19
65
LLPS-Fia-1430
ENSFALG00000006628.1
U3JVV9
PRPF8
66
LLPS-Fia-3501
ENSFALG00000003573.1
U3JLS7
PSMA3
67
LLPS-Fia-0665
ENSFALG00000008750.1
U3K275
PSPC1
68
LLPS-Fia-1020
ENSFALG00000013928.1
U3KHN1
PTBP1
69
LLPS-Fia-2625
ENSFALG00000001461.1
U3JFG8
RAPGEF1
70
LLPS-Fia-2189
ENSFALG00000001790.1
U3JGF8
RBM17
71
LLPS-Fia-2453
ENSFALG00000004868.1
U3JQL3
RNPS1
72
LLPS-Fia-1130
ENSFALG00000000679.1
U3JD56
SARNP
73
LLPS-Fia-0628
ENSFALG00000006944.1
U3JWV7
SF3A1
74
LLPS-Fia-0362
ENSFALG00000001003.1
U3JE50
SF3A3
75
LLPS-Fia-0739
ENSFALG00000004281.1
U3JNV2
SF3B1
76
LLPS-Fia-0035
ENSFALG00000000731.1
U3JDA0
SFPQ
77
LLPS-Fia-0202
ENSFALG00000012861.1
U3KEJ5
SMAD3
78
LLPS-Fia-1712
ENSFALG00000014650.1
U3KJR1
SNRNP35
79
LLPS-Fia-0349
ENSFALG00000000743.1
U3JDB3
SNRPA
80
LLPS-Fia-0922
ENSFALG00000010195.1
U3K6I7
SNRPA1
81
LLPS-Fia-1822
ENSFALG00000013668.1
U3KGW2
SNRPB2
82
LLPS-Fia-0546
ENSFALG00000000476.1
U3JCI7
SRRM1
83
LLPS-Fia-2505
ENSFALG00000000505.1
U3JCL7
SRSF10
84
LLPS-Fia-1465
ENSFALG00000001217.1
U3JER5
SRSF11
85
LLPS-Fia-2917
ENSFALG00000003234.1
U3JKR3
SRSF3
86
LLPS-Fia-1722
ENSFALG00000001346.1
U3JF46
SRSF4
87
LLPS-Fia-0261
ENSFALG00000000674.1
U3JD42
STAT3
88
LLPS-Fia-1720
ENSFALG00000004059.1
U3JN76
SUMO1
89
LLPS-Fia-1451
ENSFALG00000013285.1
U3KFR0
TGFBR1
90
LLPS-Fia-0155
ENSFALG00000013347.1
U3KFX7
TRA2B
91
LLPS-Fia-0850
ENSFALG00000008319.1
U3K0X0
TTC14
92
LLPS-Fia-2592
ENSFALG00000007070.1
U3JX72
U2SURP
93
LLPS-Fia-0912
ENSFALG00000010989.1
U3K8W1
XPO1
94
LLPS-Fia-1954
ENSFALG00000006581.1
U3JVQ8
YTHDC1
95
LLPS-Fia-1116
ENSFALG00000000491.1
U3JCK3
ZC3H11A
96
LLPS-Fia-3095
ENSFALG00000005651.1
U3JSY7
ZNF106
97
LLPS-Fia-0248
ENSFALG00000011128.1
U3K9B0
ZNF131