Dothistroma septosporum      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 32 genes.  Reviewed (0 or Unreviewed (32

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Dos-1136
DOTSEDRAFT_105349
N1PZ87
DOTSEDRAFT_105349
2
LLPS-Dos-1363
DOTSEDRAFT_122130
N1Q4Z8
DOTSEDRAFT_122130
3
LLPS-Dos-1072
DOTSEDRAFT_126513
N1PVQ8
DOTSEDRAFT_126513
4
LLPS-Dos-0127
DOTSEDRAFT_138688
M2YK13
DOTSEDRAFT_138688
5
LLPS-Dos-0854
DOTSEDRAFT_152803
N1PPB5
DOTSEDRAFT_152803
6
LLPS-Dos-1533
DOTSEDRAFT_169961
N1PRB0
DOTSEDRAFT_169961
7
LLPS-Dos-0619
DOTSEDRAFT_45416
M2YNE9
DOTSEDRAFT_45416
8
LLPS-Dos-0464
DOTSEDRAFT_48672
N1PDD8
DOTSEDRAFT_48672
9
LLPS-Dos-0266
DOTSEDRAFT_52150
N1PX09
DOTSEDRAFT_52150
10
LLPS-Dos-0081
DOTSEDRAFT_52935
N1PTK3
DOTSEDRAFT_52935
11
LLPS-Dos-1187
DOTSEDRAFT_53107
N1PKE8
DOTSEDRAFT_53107
12
LLPS-Dos-0640
DOTSEDRAFT_55328
N1PJ04
DOTSEDRAFT_55328
13
LLPS-Dos-0571
DOTSEDRAFT_56095
N1PG03
DOTSEDRAFT_56095
14
LLPS-Dos-1428
DOTSEDRAFT_68880
N1Q322
DOTSEDRAFT_68880
15
LLPS-Dos-0933
DOTSEDRAFT_69274
N1PYH2
DOTSEDRAFT_69274
16
LLPS-Dos-0209
DOTSEDRAFT_69479
N1PYQ5
DOTSEDRAFT_69479
17
LLPS-Dos-0680
DOTSEDRAFT_71600
N1PN54
DOTSEDRAFT_71600
18
LLPS-Dos-0790
DOTSEDRAFT_71659
N1PNC7
DOTSEDRAFT_71659
19
LLPS-Dos-1332
DOTSEDRAFT_72205
N1PMM0
DOTSEDRAFT_72205
20
LLPS-Dos-0055
DOTSEDRAFT_72603
M2XLB8
DOTSEDRAFT_72603
21
LLPS-Dos-0955
DOTSEDRAFT_73793
N1PJI0
DOTSEDRAFT_73793
22
LLPS-Dos-0731
DOTSEDRAFT_74195
N1PGW4
DOTSEDRAFT_74195
23
LLPS-Dos-0198
DOTSEDRAFT_75238
M2XJ67
DOTSEDRAFT_75238
24
LLPS-Dos-1488
DOTSEDRAFT_75755
N1PBN6
DOTSEDRAFT_75755
25
LLPS-Dos-0681
DOTSEDRAFT_75769
N1PBH7
DOTSEDRAFT_75769
26
LLPS-Dos-0247
DOTSEDRAFT_75903
N1PCH3
DOTSEDRAFT_75903
27
LLPS-Dos-0068
DOTSEDRAFT_77331
N1Q3M4
DOTSEDRAFT_77331
28
LLPS-Dos-1457
DOTSEDRAFT_79935
N1PNP8
DOTSEDRAFT_79935
29
LLPS-Dos-1147
DOTSEDRAFT_83541
M2YJ13
DOTSEDRAFT_83541
30
LLPS-Dos-1157
DOTSEDRAFT_84680
N1Q1W5
DOTSEDRAFT_84680
31
LLPS-Dos-0803
DOTSEDRAFT_85705
N1PW31
DOTSEDRAFT_85705
32
LLPS-Dos-0566
DOTSEDRAFT_90738
N1PG44
DOTSEDRAFT_90738