Colletotrichum gloeosporioides      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 26 genes.  Reviewed (0 or Unreviewed (26

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cog-0582
CGGC5_11566
L2FNE5
CGGC5_11566
2
LLPS-Cog-0043
CGGC5_11782
L2FLU6
CGGC5_11782
3
LLPS-Cog-0032
CGGC5_12304
L2FL33
CGGC5_12304
4
LLPS-Cog-1093
CGGC5_12767
L2FJI5
CGGC5_12767
5
LLPS-Cog-0497
CGGC5_13145
L2FHN9
CGGC5_13145
6
LLPS-Cog-1098
CGGC5_13516
L2FHT6
CGGC5_13516
7
LLPS-Cog-0421
CGGC5_13705
L2FF76
CGGC5_13705
8
LLPS-Cog-0182
CGGC5_15113
L2GJI5
CGGC5_15113
9
LLPS-Cog-1190
CGGC5_15259
L2GI59
CGGC5_15259
10
LLPS-Cog-0154
CGGC5_15279
L2GH91
CGGC5_15279
11
LLPS-Cog-0744
CGGC5_2301
L2FCA0
CGGC5_2301
12
LLPS-Cog-1304
CGGC5_2413
L2FCC6
CGGC5_2413
13
LLPS-Cog-1008
CGGC5_3450
L2GFG8
CGGC5_3450
14
LLPS-Cog-0706
CGGC5_392
L2GED1
CGGC5_392
15
LLPS-Cog-0998
CGGC5_4306
L2GCY5
CGGC5_4306
16
LLPS-Cog-0170
CGGC5_4764
L2GB64
CGGC5_4764
17
LLPS-Cog-1321
CGGC5_4840
L2GB01
CGGC5_4840
18
LLPS-Cog-0900
CGGC5_5021
L2GA29
CGGC5_5021
19
LLPS-Cog-0066
CGGC5_5233
L2G8N5
CGGC5_5233
20
LLPS-Cog-0177
CGGC5_5317
L2G897
CGGC5_5317
21
LLPS-Cog-0351
CGGC5_5336
L2GA16
CGGC5_5336
22
LLPS-Cog-1334
CGGC5_5642
L2G864
CGGC5_5642
23
LLPS-Cog-0418
CGGC5_7122
L2G3D4
CGGC5_7122
24
LLPS-Cog-0279
CGGC5_7835
L2G184
CGGC5_7835
25
LLPS-Cog-0834
CGGC5_9408
L2FW51
CGGC5_9408
26
LLPS-Cog-0199
CGGC5_9934
L2FU15
CGGC5_9934