Ciona savignyi      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 62 genes.  Reviewed (0 or Unreviewed (62

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cis-0022
ENSCSAVG00000003567.1
H2YKY1
2
LLPS-Cis-0026
ENSCSAVG00000000748.1
H2Y7P7
3
LLPS-Cis-0031
ENSCSAVG00000002676.1
H2YGR1
4
LLPS-Cis-0096
ENSCSAVG00000001660.1
H2YBU6
5
LLPS-Cis-0147
ENSCSAVG00000007421.1
H2Z4X7
6
LLPS-Cis-0151
ENSCSAVG00000007687.1
H2Z672
7
LLPS-Cis-0155
ENSCSAVG00000001870.1
H2YCV0
8
LLPS-Cis-0215
ENSCSAVG00000007825.1
H2Z6X0
9
LLPS-Cis-0223
ENSCSAVG00000003533.1
H2YKR9
10
LLPS-Cis-0230
ENSCSAVG00000001047.1
H2Y908
11
LLPS-Cis-0312
ENSCSAVG00000000396.1
H2Y5W2
12
LLPS-Cis-0313
ENSCSAVG00000000472.1
H2Y680
13
LLPS-Cis-0327
ENSCSAVG00000008052.1
H2Z823
14
LLPS-Cis-0368
ENSCSAVG00000005965.1
H2YXR2
15
LLPS-Cis-0392
ENSCSAVG00000010109.1
H2ZHW0
16
LLPS-Cis-0416
ENSCSAVG00000001291.1
H2YA50
17
LLPS-Cis-0465
ENSCSAVG00000005608.1
H2YW43
18
LLPS-Cis-0473
ENSCSAVG00000010212.1
H2ZIC9
19
LLPS-Cis-0493
ENSCSAVG00000007862.1
H2Z749
20
LLPS-Cis-0494
ENSCSAVG00000006846.1
H2Z278
21
LLPS-Cis-0499
ENSCSAVG00000001254.1
H2Y9Y9
22
LLPS-Cis-0517
ENSCSAVG00000001274.1
H2YA27
23
LLPS-Cis-0546
ENSCSAVG00000010868.1
H2ZLP8
24
LLPS-Cis-0577
ENSCSAVG00000002027.1
H2YDK8
25
LLPS-Cis-0599
ENSCSAVG00000010518.1
H2ZJV8
26
LLPS-Cis-0605
ENSCSAVG00000002894.1
H2YHR2
27
LLPS-Cis-0635
ENSCSAVG00000009055.1
H2ZCW6
28
LLPS-Cis-0647
ENSCSAVG00000010396.1
H2ZJ94
29
LLPS-Cis-0653
ENSCSAVG00000003161.1
H2YJ04
30
LLPS-Cis-0736
ENSCSAVG00000002002.1
H2YDH2
31
LLPS-Cis-0776
ENSCSAVG00000009626.1
H2ZFJ0
32
LLPS-Cis-0822
ENSCSAVG00000002001.1
H2YDH1
33
LLPS-Cis-0833
ENSCSAVG00000004857.1
H2YS57
34
LLPS-Cis-0984
ENSCSAVG00000009199.1
H2ZDI5
35
LLPS-Cis-1012
ENSCSAVG00000005768.1
H2YWW1
36
LLPS-Cis-1102
ENSCSAVG00000002559.1
H2YG72
37
LLPS-Cis-1103
ENSCSAVG00000011750.1
H2ZR02
38
LLPS-Cis-1109
ENSCSAVG00000003919.1
H2YMJ4
39
LLPS-Cis-1130
ENSCSAVG00000003324.1
H2YJR8
40
LLPS-Cis-1156
ENSCSAVG00000005063.1
H2YT67
41
LLPS-Cis-1221
ENSCSAVG00000008782.1
H2ZBN3
42
LLPS-Cis-1241
ENSCSAVG00000001900.1
H2YCZ6
43
LLPS-Cis-1249
ENSCSAVG00000004701.1
H2YRA6
44
LLPS-Cis-1278
ENSCSAVG00000011376.1
H2ZP83
45
LLPS-Cis-1310
ENSCSAVG00000009039.1
H2ZCT7
46
LLPS-Cis-1372
ENSCSAVG00000004946.1
H2YSK6
47
LLPS-Cis-1449
ENSCSAVG00000001190.1
H2Y9N7
48
LLPS-Cis-1490
ENSCSAVG00000006813.1
H2Z1Z8
49
LLPS-Cis-1539
ENSCSAVG00000006626.1
H2Z161
50
LLPS-Cis-1592
ENSCSAVG00000004971.1
H2YSP6
51
LLPS-Cis-1666
ENSCSAVG00000006614.1
H2Z148
52
LLPS-Cis-1714
ENSCSAVG00000005254.1
H2YU45
53
LLPS-Cis-1751
ENSCSAVG00000006568.1
H2Z0W4
54
LLPS-Cis-1805
ENSCSAVG00000010972.1
H2ZM58
55
LLPS-Cis-1822
ENSCSAVG00000000996.1
H2Y8S5
56
LLPS-Cis-1910
ENSCSAVG00000000720.1
H2Y7J4
57
LLPS-Cis-2030
ENSCSAVG00000006093.1
H2YYD7
58
LLPS-Cis-2031
ENSCSAVG00000004749.1
H2YRK1
59
LLPS-Cis-2033
ENSCSAVG00000000313.1
H2Y5G0
60
LLPS-Cis-2047
ENSCSAVG00000004193.1
H2YNV9
61
LLPS-Cis-2070
ENSCSAVG00000006014.1
H2YXX8
62
LLPS-Cis-1710
ENSCSAVG00000000917.1
Q8MY62
Cs-CKI