Chlorocebus sabaeus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 119 genes.  Reviewed (2 or Unreviewed (117

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Chs-0003
ENSCSAG00000015399.1
A0A0D9RS87
PNN
2
LLPS-Chs-0004
ENSCSAG00000001082.1
A0A0D9S7U2
SFPQ
3
LLPS-Chs-0041
ENSCSAG00000000500.1
A0A0D9S9G5
4
LLPS-Chs-0234
ENSCSAG00000018425.1
A0A0D9SAS8
5
LLPS-Chs-0277
ENSCSAG00000002019.1
A0A0D9S577
6
LLPS-Chs-0528
ENSCSAG00000001866.1
A0A0D9S5M6
7
LLPS-Chs-0633
ENSCSAG00000005219.1
A0A0D9QYV0
8
LLPS-Chs-0644
ENSCSAG00000007560.1
A0A0D9R5A7
9
LLPS-Chs-0670
ENSCSAG00000013716.1
A0A0D9RMN2
10
LLPS-Chs-1049
ENSCSAG00000005642.1
A0A0D9R014
11
LLPS-Chs-1278
ENSCSAG00000019437.1
A0A0D9SDK6
12
LLPS-Chs-3254
ENSCSAG00000005436.1
A0A0D9QZF1
13
LLPS-Chs-4321
ENSCSAG00000018570.1
A0A0D9SB64
14
LLPS-Chs-2357
ENSCSAG00000009574.1
A0A0D9RB41
AGO2
15
LLPS-Chs-2245
ENSCSAG00000018063.1
A0A0D9RZP4
AKAP17A
16
LLPS-Chs-0428
ENSCSAG00000002216.1
A0A0D9S4M9
ALYREF
17
LLPS-Chs-2256
ENSCSAG00000003159.1
A0A0D9S1Z6
ANXA10
18
LLPS-Chs-0880
ENSCSAG00000002076.1
A0A0D9S520
ARL6IP4
19
LLPS-Chs-1968
ENSCSAG00000011281.1
A0A0D9RFU3
ATR
20
LLPS-Chs-3921
ENSCSAG00000001652.1
A0A0D9S686
BCAS2
21
LLPS-Chs-1048
ENSCSAG00000014663.1
A0A0D9RQ95
C9orf78
22
LLPS-Chs-0626
ENSCSAG00000006939.1
A0A0D9R3L0
CARM1
23
LLPS-Chs-2423
ENSCSAG00000002777.1
A0A0D9S331
CASC3
24
LLPS-Chs-0727
ENSCSAG00000012077.1
A0A0D9RI22
CCNL1
25
LLPS-Chs-0538
ENSCSAG00000012464.1
A0A0D9RJ55
CDC5L
26
LLPS-Chs-1552
ENSCSAG00000015846.1
A0A0D9RTG8
CDK7
27
LLPS-Chs-1851
ENSCSAG00000013826.1
A0A0D9RMW9
CDK9
28
LLPS-Chs-2109
ENSCSAG00000014729.1
A0A0D9RQF6
CDKL5
29
LLPS-Chs-0996
ENSCSAG00000011985.1
A0A0D9RHT1
COP1
30
LLPS-Chs-0066
ENSCSAG00000011814.1
A0A0D9RHB9
CSNK1A1
31
LLPS-Chs-1287
ENSCSAG00000008517.1
A0A0D9R829
DDX39B
32
LLPS-Chs-1856
ENSCSAG00000011993.1
A0A0D9RHU0
DGCR8
33
LLPS-Chs-3402
ENSCSAG00000006329.1
A0A0D9R1Y1
DNAJB1
34
LLPS-Chs-0459
ENSCSAG00000007570.1
A0A0D9R5E5
DNAJC17
35
LLPS-Chs-3869
ENSCSAG00000014943.1
A0A0D9RR10
DYRK3
36
LLPS-Chs-2781
ENSCSAG00000003916.1
A0A0D9QV91
EGF
37
LLPS-Chs-0627
ENSCSAG00000013066.1
A0A0D9RKV5
ERH
38
LLPS-Chs-0350
ENSCSAG00000003330.1
A0A0D9S1H8
EZH1
39
LLPS-Chs-3790
ENSCSAG00000003286.1
A0A0D9S1M2
FAM76B
40
LLPS-Chs-1051
ENSCSAG00000008913.1
A0A0D9R992
FAM83H
41
LLPS-Chs-0939
ENSCSAG00000010262.1
A0A0D9RCM4
FANCD2
42
LLPS-Chs-3331
ENSCSAG00000017169.1
A0A0D9RX69
FANCI
43
LLPS-Chs-3908
ENSCSAG00000017668.1
A0A0D9RYK2
FBXL18
44
LLPS-Chs-3155
ENSCSAG00000015409.1
A0A0D9RSA9
FGFR1
45
LLPS-Chs-2142
ENSCSAG00000007801.1
A0A0D9R600
FRMD8
46
LLPS-Chs-1557
ENSCSAG00000005711.1
A0A0D9R082
FUS
47
LLPS-Chs-1400
ENSCSAG00000008466.1
A0A0D9R7Y3
FYTTD1
48
LLPS-Chs-1820
ENSCSAG00000015361.1
A0A0D9RS05
GLI3
49
LLPS-Chs-0935
ENSCSAG00000007111.1
A0A0D9R447
GSK3B
50
LLPS-Chs-0812
ENSCSAG00000014072.1
A0A0D9RNL7
HIF1A
51
LLPS-Chs-3140
ENSCSAG00000003068.1
A0A0D9S285
HIF3A
52
LLPS-Chs-2037
ENSCSAG00000008376.1
A0A0D9R7P3
HIPK2
53
LLPS-Chs-2277
ENSCSAG00000014175.1
A0A0D9RNX3
HNRNPA2B1
54
LLPS-Chs-4224
ENSCSAG00000017943.1
A0A0D9RZC5
HSPH1
55
LLPS-Chs-1669
ENSCSAG00000006983.1
A0A0D9R3S5
ILF3
56
LLPS-Chs-4602
ENSCSAG00000012909.1
A0A0D9RKE3
IVNS1ABP
57
LLPS-Chs-1152
ENSCSAG00000004208.1
A0A0D9QW15
KPNA2
58
LLPS-Chs-2843
ENSCSAG00000013092.1
A0A0D9RKX8
LUC7L
59
LLPS-Chs-4069
ENSCSAG00000008410.1
A0A0D9R7S5
LUC7L2
60
LLPS-Chs-2954
ENSCSAG00000001289.1
A0A0D9S787
MAGOH
61
LLPS-Chs-0502
ENSCSAG00000015234.1
A0A0D9RRU2
NAGK
62
LLPS-Chs-1258
ENSCSAG00000018345.1
A0A0D9S0G4
NKAP
63
LLPS-Chs-1435
ENSCSAG00000011364.1
A0A0D9RG28
NONO
64
LLPS-Chs-3822
ENSCSAG00000002499.1
A0A0D9S3V5
NOSIP
65
LLPS-Chs-0910
ENSCSAG00000013558.1
A0A0D9RM81
NR5A1
66
LLPS-Chs-3526
ENSCSAG00000006841.1
A0A0D9R3D2
NSRP1
67
LLPS-Chs-1438
ENSCSAG00000014618.1
A0A0D9RQ55
NUAK2
68
LLPS-Chs-2881
ENSCSAG00000006739.1
A0A0D9R335
NXF1
69
LLPS-Chs-0283
ENSCSAG00000010646.1
A0A0D9RDY4
OGG1
70
LLPS-Chs-3465
ENSCSAG00000018899.1
A0A0D9SC29
P2RY12
71
LLPS-Chs-1785
ENSCSAG00000016036.1
A0A0D9RU12
PABPN1
72
LLPS-Chs-0138
ENSCSAG00000019441.1
A0A0D9SDL0
PCBP1
73
LLPS-Chs-2791
ENSCSAG00000003275.1
A0A0D9S1N3
PLRG1
74
LLPS-Chs-1743
ENSCSAG00000015209.1
A0A0D9RRS0
PPIG
75
LLPS-Chs-0697
ENSCSAG00000006254.1
A0A0D9R1Q7
PRPF19
76
LLPS-Chs-0708
ENSCSAG00000013929.1
A0A0D9RN81
PRPF8
77
LLPS-Chs-2972
ENSCSAG00000014435.1
A0A0D9RPM3
PSMA3
78
LLPS-Chs-0847
ENSCSAG00000018095.1
A0A0D9RZS5
PSPC1
79
LLPS-Chs-0199
ENSCSAG00000012749.1
A0A0D9RJZ5
PTBP1
80
LLPS-Chs-0533
ENSCSAG00000014892.1
A0A0D9RQV8
RAPGEF1
81
LLPS-Chs-1273
ENSCSAG00000013564.1
A0A0D9RM61
RBM17
82
LLPS-Chs-1050
ENSCSAG00000016213.1
A0A0D9RUJ2
RBM23
83
LLPS-Chs-0671
ENSCSAG00000007947.1
A0A0D9R6G2
RBMX2
84
LLPS-Chs-0504
ENSCSAG00000011197.1
A0A0D9RFM3
RNF151
85
LLPS-Chs-1711
ENSCSAG00000005303.1
A0A0D9QZ24
SARNP
86
LLPS-Chs-1825
ENSCSAG00000007258.1
A0A0D9R4I5
SF1
87
LLPS-Chs-0040
ENSCSAG00000009470.1
A0A0D9RAT5
SF3A1
88
LLPS-Chs-0033
ENSCSAG00000011717.1
A0A0D9RH26
SF3A2
89
LLPS-Chs-0932
ENSCSAG00000001120.1
A0A0D9S7Q4
SF3A3
90
LLPS-Chs-0053
ENSCSAG00000011505.1
A0A0D9RGG4
SF3B1
91
LLPS-Chs-0411
ENSCSAG00000013275.1
A0A0D9RLF4
SMAD3
92
LLPS-Chs-0629
ENSCSAG00000017369.1
A0A0D9RXR5
SNRNP200
93
LLPS-Chs-1136
ENSCSAG00000018950.1
A0A0D9SC78
SNRNP35
94
LLPS-Chs-3605
ENSCSAG00000002759.1
A0A0D9S347
SNRNP70
95
LLPS-Chs-0113
ENSCSAG00000003646.1
A0A0D9QUH9
SNRPA
96
LLPS-Chs-2542
ENSCSAG00000016839.1
A0A0D9RWA2
SNRPA1
97
LLPS-Chs-1324
ENSCSAG00000011677.1
A0A0D9RGY4
SNRPB2
98
LLPS-Chs-3690
ENSCSAG00000009823.1
A0A0D9RBS6
SON
99
LLPS-Chs-2340
ENSCSAG00000010365.1
A0A0D9RDA8
SRRM2
100
LLPS-Chs-3490
ENSCSAG00000000935.1
A0A0D9S884
SRSF10
101
LLPS-Chs-4208
ENSCSAG00000001375.1
A0A0D9S704
SRSF11
102
LLPS-Chs-1462
ENSCSAG00000005108.1
A0A0D9QYJ1
SRSF2
103
LLPS-Chs-1814
ENSCSAG00000010291.1
A0A0D9RD33
SRSF3
104
LLPS-Chs-0968
ENSCSAG00000001022.1
A0A0D9S801
SRSF4
105
LLPS-Chs-0505
ENSCSAG00000012296.1
A0A0D9RIM7
SRSF7
106
LLPS-Chs-0978
ENSCSAG00000002257.1
A0A0D9S4J2
SRSF9
107
LLPS-Chs-2888
ENSCSAG00000003215.1
A0A0D9S1T9
STAT3
108
LLPS-Chs-4761
ENSCSAG00000009417.1
A0A0D9RAM5
TAP1
109
LLPS-Chs-0545
ENSCSAG00000011074.1
A0A0D9RF96
TGFBR1
110
LLPS-Chs-2686
ENSCSAG00000014034.1
A0A0D9RNI1
TRA2B
111
LLPS-Chs-4831
ENSCSAG00000013105.1
A0A0D9RKZ1
TTC14
112
LLPS-Chs-1776
ENSCSAG00000001722.1
A0A0D9S618
U2AF2
113
LLPS-Chs-0022
ENSCSAG00000011321.1
A0A0D9RFZ0
U2SURP
114
LLPS-Chs-0521
ENSCSAG00000014606.1
A0A0D9RQ38
XPO1
115
LLPS-Chs-0634
ENSCSAG00000005252.1
A0A0D9QYX5
YTHDC1
116
LLPS-Chs-0926
ENSCSAG00000014396.1
A0A0D9RPI5
ZC3H11A
117
LLPS-Chs-2138
ENSCSAG00000008803.1
A0A0D9R8W9
ZNF106
118
LLPS-Chs-4253
ENSCSAG00000016781.1
A0A0D9RW46
ZNF131
119
LLPS-Chs-2009
ENSCSAG00000005872.1
A0A0D9R0N9
ZNF688