Aspergillus oryzae      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 32 genes.  Reviewed (0 or Unreviewed (32

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Aso-1464
AO090001000448
Q2UN99
AO090001000448
2
LLPS-Aso-0122
AO090001000665
Q2UMQ4
AO090001000665
3
LLPS-Aso-1463
AO090003000005
Q2UMH0
AO090003000005
4
LLPS-Aso-0661
AO090003000020
Q2UMF5
AO090003000020
5
LLPS-Aso-0871
AO090003000592
Q2UL09
AO090003000592
6
LLPS-Aso-1411
AO090003000632
Q2UKX5
AO090003000632
7
LLPS-Aso-0547
AO090003000807
Q2UKH4
AO090003000807
8
LLPS-Aso-0082
AO090003001026
Q2UJY2
AO090003001026
9
LLPS-Aso-0337
AO090005000259
Q2USW9
AO090005000259
10
LLPS-Aso-0090
AO090005000260
Q2USW8
AO090005000260
11
LLPS-Aso-0660
AO090005000269
Q2USW3
AO090005000269
12
LLPS-Aso-0776
AO090005000696
Q2URT5
AO090005000696
13
LLPS-Aso-0137
AO090005001650
Q2UPG6
AO090005001650
14
LLPS-Aso-0086
AO090011000824
Q2TZJ9
AO090011000824
15
LLPS-Aso-1306
AO090011000832
Q2TZJ2
AO090011000832
16
LLPS-Aso-1056
AO090012000924
Q2UBP0
AO090012000924
17
LLPS-Aso-0429
AO090020000106
Q2U525
AO090020000106
18
LLPS-Aso-0903
AO090023000898
Q2UGC0
AO090023000898
19
LLPS-Aso-0862
AO090026000203
Q2UFH8
AO090026000203
20
LLPS-Aso-0742
AO090026000655
Q2UEE3
AO090026000655
21
LLPS-Aso-0323
AO090026000751
Q2UE60
AO090026000751
22
LLPS-Aso-1180
AO090038000349
Q2U2R5
AO090038000349
23
LLPS-Aso-0133
AO090038000567
Q2U280
AO090038000567
24
LLPS-Aso-0245
AO090102000354
Q2UAK0
AO090102000354
25
LLPS-Aso-0220
AO090120000202
Q2U6K2
AO090120000202
26
LLPS-Aso-1522
AO090120000314
Q2U6A9
AO090120000314
27
LLPS-Aso-1419
AO090120000365
Q2U663
AO090120000365
28
LLPS-Aso-0348
AO090120000497
Q2U5V5
AO090120000497
29
LLPS-Aso-1091
AO090120000500
Q2U5V2
AO090120000500
30
LLPS-Aso-0466
AO090206000006
Q2PIY8
AO090206000006
31
LLPS-Aso-0454
AO090701000024
Q2U9H9
AO090701000024
32
LLPS-Aso-1478
AO090701000754
Q2U7P7
AO090701000754