Aspergillus fumigatus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 32 genes.  Reviewed (0 or Unreviewed (32

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Asfu-0308
AFUA_1G05110
Q4WJR0
AFUA_1G05110
2
LLPS-Asfu-0910
AFUA_1G06460
Q4WJC5
AFUA_1G06460
3
LLPS-Asfu-0597
AFUA_1G08790
Q4WTM4
AFUA_1G08790
4
LLPS-Asfu-1627
AFUA_1G09490
Q4WTF4
AFUA_1G09490
5
LLPS-Asfu-0720
AFUA_1G17490
Q4WR55
AFUA_1G17490
6
LLPS-Asfu-0139
AFUA_2G03030
Q4WI55
AFUA_2G03030
7
LLPS-Asfu-0759
AFUA_2G08730
Q4X1U6
AFUA_2G08730
8
LLPS-Asfu-1268
AFUA_2G08770
Q4X1U3
AFUA_2G08770
9
LLPS-Asfu-1058
AFUA_2G13780
Q4X0E2
AFUA_2G13780
10
LLPS-Asfu-0137
AFUA_3G06440
Q4WWM9
AFUA_3G06440
11
LLPS-Asfu-0572
AFUA_3G08120
Q4WX39
AFUA_3G08120
12
LLPS-Asfu-0369
AFUA_4G04760
Q4W9I9
AFUA_4G04760
13
LLPS-Asfu-0846
AFUA_4G06840
Q4WNT0
AFUA_4G06840
14
LLPS-Asfu-0034
AFUA_4G11880
Q4WQ80
AFUA_4G11880
15
LLPS-Asfu-0845
AFUA_5G02420
Q4WEB5
AFUA_5G02420
16
LLPS-Asfu-1161
AFUA_5G11930
Q4WVF6
AFUA_5G11930
17
LLPS-Asfu-0654
AFUA_5G12440
Q4WVK6
AFUA_5G12440
18
LLPS-Asfu-1316
AFUA_5G13480
Q4WVV8
AFUA_5G13480
19
LLPS-Asfu-0310
AFUA_5G13510
Q4WVW1
AFUA_5G13510
20
LLPS-Asfu-0975
AFUA_6G05120
Q4WDL1
AFUA_6G05120
21
LLPS-Asfu-0774
AFUA_6G06350
Q4WNH5
AFUA_6G06350
22
LLPS-Asfu-0840
AFUA_6G06490
Q4WNG1
AFUA_6G06490
23
LLPS-Asfu-0671
AFUA_7G01910
Q4WAN3
AFUA_7G01910
24
LLPS-Asfu-0475
AFUA_7G03720
Q4WG43
AFUA_7G03720
25
LLPS-Asfu-0534
AFUA_7G05260
Q4WGJ6
AFUA_7G05260
26
LLPS-Asfu-0005
AFUA_7G05310
Q4WGK1
AFUA_7G05310
27
LLPS-Asfu-0016
AFUA_7G05320
Q4WGK2
AFUA_7G05320
28
LLPS-Asfu-0221
AFUA_8G04740
Q4WCE2
AFUA_8G04740
29
LLPS-Asfu-0120
AFUA_5G05510
Q4WTN5
bur1
30
LLPS-Asfu-1131
AFUA_2G05540
Q4WHG0
cef1
31
LLPS-Asfu-1102
AFUA_5G11000
Q4WV66
lea1
32
LLPS-Asfu-0021
AFUA_1G10710
Q4WT34
prp46