Anolis carolinensis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 103 genes.  Reviewed (0 or Unreviewed (103

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Anc-2268
ENSACAG00000000167.3
G1K8D5
AGO2
2
LLPS-Anc-0843
ENSACAG00000005956.3
G1KEU4
AKAP17A
3
LLPS-Anc-0451
ENSACAG00000015820.3
H9GMQ9
ANXA2
4
LLPS-Anc-2518
ENSACAG00000015676.3
H9GMK8
ARL6IP4
5
LLPS-Anc-1177
ENSACAG00000004915.3
G1KDD8
ATR
6
LLPS-Anc-0810
ENSACAG00000002720.3
G1KB41
BCAS2
7
LLPS-Anc-0029
ENSACAG00000015347.2
G1KR09
CARM1
8
LLPS-Anc-0731
ENSACAG00000002674.3
G1KB37
CASC3
9
LLPS-Anc-0967
ENSACAG00000001547.3
G1K9P5
CCNL1
10
LLPS-Anc-2794
ENSACAG00000012874.3
G1KMZ5
CDC5L
11
LLPS-Anc-2597
ENSACAG00000011086.3
H9GH90
CDK1
12
LLPS-Anc-0365
ENSACAG00000016452.3
G1KSN0
CDK7
13
LLPS-Anc-0842
ENSACAG00000006827.3
H9GBZ2
CDK9
14
LLPS-Anc-3630
ENSACAG00000011708.3
G1KLE0
CDKL5
15
LLPS-Anc-1314
ENSACAG00000002517.3
H9G6I9
CLK2
16
LLPS-Anc-2996
ENSACAG00000014695.3
G1KQ96
COP1
17
LLPS-Anc-2971
ENSACAG00000015659.3
G1KRF6
csnk1a1
18
LLPS-Anc-0536
ENSACAG00000006163.3
H9GB37
ctnnbl1
19
LLPS-Anc-0778
ENSACAG00000012240.3
G1KM58
DDX39B
20
LLPS-Anc-1834
ENSACAG00000001437.3
H9G598
DDX46
21
LLPS-Anc-1302
ENSACAG00000008031.2
H9GDE6
DGCR8
22
LLPS-Anc-3962
ENSACAG00000017022.3
G1KTF1
DNAJB1
23
LLPS-Anc-1464
ENSACAG00000003311.3
H9G7C7
DNAJC17
24
LLPS-Anc-3148
ENSACAG00000007799.2
H9GD22
DYRK3
25
LLPS-Anc-3604
ENSACAG00000010153.3
G1KJV5
EGF
26
LLPS-Anc-0446
ENSACAG00000005167.3
H9G9X5
ERH
27
LLPS-Anc-1945
ENSACAG00000014235.3
G1KPU3
EZH1
28
LLPS-Anc-1429
ENSACAG00000028830.1
R4G9A0
FAM76B
29
LLPS-Anc-1238
ENSACAG00000001808.2
H9G5K2
FAM83H
30
LLPS-Anc-3407
ENSACAG00000007747.3
G1KH83
FANCD2
31
LLPS-Anc-2145
ENSACAG00000000882.3
H9G4R5
fanci
32
LLPS-Anc-3309
ENSACAG00000001175.3
H9G4R7
FBXL18
33
LLPS-Anc-1677
ENSACAG00000018003.2
H9GPZ1
FGFR1
34
LLPS-Anc-2581
ENSACAG00000012883.3
H9GJE4
FRMD8
35
LLPS-Anc-0018
ENSACAG00000006776.3
H9GC18
FUS
36
LLPS-Anc-3416
ENSACAG00000002796.3
H9G6P3
FYTTD1
37
LLPS-Anc-1929
ENSACAG00000017547.3
G1KU52
GLI3
38
LLPS-Anc-1344
ENSACAG00000003655.3
H9G7Y1
GSK3B
39
LLPS-Anc-1307
ENSACAG00000016205.3
G1KSA4
HIF1A
40
LLPS-Anc-1143
ENSACAG00000016766.2
H9GNK2
HIF3A
41
LLPS-Anc-2808
ENSACAG00000016940.3
G1KTD0
HIPK2
42
LLPS-Anc-1041
ENSACAG00000012992.3
G1KN60
HNRNPA2B1
43
LLPS-Anc-1693
ENSACAG00000001479.2
G1K9R8
HNRNPK
44
LLPS-Anc-3919
ENSACAG00000004925.3
G1KDG7
HSPH1
45
LLPS-Anc-0892
ENSACAG00000015632.3
G1KRG5
ILF3
46
LLPS-Anc-0722
ENSACAG00000002224.3
H9G620
IVNS1ABP
47
LLPS-Anc-1579
ENSACAG00000000319.3
H9G3N8
KPNA2
48
LLPS-Anc-2267
ENSACAG00000000459.3
H9G3U3
LOC100558440
49
LLPS-Anc-2914
ENSACAG00000013758.3
H9GKD1
LOC100558908
50
LLPS-Anc-2016
ENSACAG00000003455.3
H9G7L3
LOC100563954
51
LLPS-Anc-3932
ENSACAG00000001606.3
H9G5G1
LUC7L
52
LLPS-Anc-2742
ENSACAG00000000524.2
H9G3X8
NAGK
53
LLPS-Anc-0114
ENSACAG00000013921.3
G1KPB9
NOSIP
54
LLPS-Anc-3610
ENSACAG00000009330.3
R4GCA2
NR5A1
55
LLPS-Anc-1679
ENSACAG00000011582.3
H9GHW1
NSRP1
56
LLPS-Anc-2279
ENSACAG00000014491.3
G1KPZ9
NUAK2
57
LLPS-Anc-1435
ENSACAG00000009992.3
G1KJL2
OGG1
58
LLPS-Anc-0975
ENSACAG00000007977.2
G1KWB7
P2RY12
59
LLPS-Anc-3502
ENSACAG00000006185.2
H9GB28
pabpn1
60
LLPS-Anc-1922
ENSACAG00000015703.3
G1KRH3
PLRG1
61
LLPS-Anc-0469
ENSACAG00000015894.3
G1KRV3
PNN
62
LLPS-Anc-1444
ENSACAG00000017064.3
H9GNX7
PPIG
63
LLPS-Anc-1008
ENSACAG00000017797.3
H9GPQ0
PRPF19
64
LLPS-Anc-1261
ENSACAG00000014784.3
H9GLH2
PRPF8
65
LLPS-Anc-2538
ENSACAG00000014541.3
H9GLA3
PSMA3
66
LLPS-Anc-1348
ENSACAG00000002093.2
G1KAB1
PSPC1
67
LLPS-Anc-1237
ENSACAG00000005418.3
G1KE35
RBM17
68
LLPS-Anc-2005
ENSACAG00000001569.3
H9G5F2
RBM23
69
LLPS-Anc-1364
ENSACAG00000008819.3
H9GEE7
RBMX2
70
LLPS-Anc-2539
ENSACAG00000004088.2
H9G8I7
RNPS1
71
LLPS-Anc-1545
ENSACAG00000015446.3
H9GMB8
SARNP
72
LLPS-Anc-1844
ENSACAG00000016404.3
H9GN87
sf1
73
LLPS-Anc-1770
ENSACAG00000009415.2
H9GF80
SF3A1
74
LLPS-Anc-1686
ENSACAG00000017058.2
H9GNY9
SF3A3
75
LLPS-Anc-0037
ENSACAG00000009612.3
H9GFG8
SF3B1
76
LLPS-Anc-0609
ENSACAG00000000434.3
H9G3S7
SNRNP200
77
LLPS-Anc-1121
ENSACAG00000015421.2
H9GM98
SNRNP35
78
LLPS-Anc-3219
ENSACAG00000013276.3
G1KNI8
SNRNP70
79
LLPS-Anc-0909
ENSACAG00000013557.3
H9GK03
SNRPA
80
LLPS-Anc-0177
ENSACAG00000003173.2
H9G762
SNRPA1
81
LLPS-Anc-0322
ENSACAG00000000582.3
G1K8L0
SNRPB2
82
LLPS-Anc-0829
ENSACAG00000004681.2
G1KX51
son
83
LLPS-Anc-2448
ENSACAG00000004879.3
G1KDC7
SPOP
84
LLPS-Anc-1351
ENSACAG00000017848.3
H9GPT3
SRRM1
85
LLPS-Anc-2220
ENSACAG00000005542.2
H9GAB8
srsf1
86
LLPS-Anc-3553
ENSACAG00000005327.2
H9GA31
SRSF10
87
LLPS-Anc-1123
ENSACAG00000013654.3
H9GKA1
SRSF11
88
LLPS-Anc-0330
ENSACAG00000008553.2
G1KHX6
srsf2
89
LLPS-Anc-2885
ENSACAG00000016637.2
G1KSV6
SRSF3
90
LLPS-Anc-0188
ENSACAG00000006082.3
G1KF09
SRSF7
91
LLPS-Anc-0758
ENSACAG00000002877.3
H9G6T3
SRSF9
92
LLPS-Anc-2043
ENSACAG00000017940.3
G1KUK6
STAT3
93
LLPS-Anc-0218
ENSACAG00000005177.3
H9G9Y1
SUMO1
94
LLPS-Anc-0946
ENSACAG00000009195.3
G1KIM7
TGFBR1
95
LLPS-Anc-1000
ENSACAG00000029688.1
R4GAT3
TRA2B
96
LLPS-Anc-2753
ENSACAG00000004108.2
G1KCL1
TTC14
97
LLPS-Anc-0223
ENSACAG00000015489.2
H9GMF2
U2AF2
98
LLPS-Anc-2187
ENSACAG00000009512.3
G1KJ30
U2SURP
99
LLPS-Anc-1217
ENSACAG00000002501.3
H9G6E3
XPO1
100
LLPS-Anc-1628
ENSACAG00000009697.3
G1KJB2
YTHDC1
101
LLPS-Anc-2526
ENSACAG00000010077.3
G1KZ30
zc3h11a
102
LLPS-Anc-2579
ENSACAG00000015649.3
G1KRE7
ZNF106
103
LLPS-Anc-0109
ENSACAG00000010702.3
G1KKG1
ZNF131