Anas platyrhynchos      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 85 genes.  Reviewed (0 or Unreviewed (85

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Anp-1515
ENSAPLG00000001659.1
U3I1G0
2
LLPS-Anp-2309
ENSAPLG00000014745.1
U3J509
3
LLPS-Anp-2255
ENSAPLG00000010465.1
U3ISN8
AGO2
4
LLPS-Anp-0381
ENSAPLG00000010413.1
U3ISA7
AKAP17A
5
LLPS-Anp-0945
ENSAPLG00000007406.1
R0KUM4
Anapl_18909
6
LLPS-Anp-2644
ENSAPLG00000007293.1
U3II56
ANXA10
7
LLPS-Anp-0408
ENSAPLG00000006103.1
U3IES1
ANXA2
8
LLPS-Anp-0267
ENSAPLG00000001837.1
U3I250
ARL6IP4
9
LLPS-Anp-1700
ENSAPLG00000003751.1
U3I7Y8
ATR
10
LLPS-Anp-2937
ENSAPLG00000010436.1
R0KAY5
BCAS2
11
LLPS-Anp-1719
ENSAPLG00000008571.1
U3ILY8
C9orf78
12
LLPS-Anp-1050
ENSAPLG00000010427.1
R0K9F6
CCNL1
13
LLPS-Anp-1387
ENSAPLG00000015586.1
U3J7K2
CDC5L
14
LLPS-Anp-0879
ENSAPLG00000010270.1
U3IRZ2
CDK1
15
LLPS-Anp-1240
ENSAPLG00000005769.1
U3IDN5
CDK7
16
LLPS-Anp-3254
ENSAPLG00000010656.1
U3IT20
CDKL5
17
LLPS-Anp-2572
ENSAPLG00000012185.1
U3IXM3
CLK2
18
LLPS-Anp-2035
ENSAPLG00000015973.1
U3J8P7
COP1
19
LLPS-Anp-1605
ENSAPLG00000010571.1
U3ISY9
CSNK1A1
20
LLPS-Anp-1223
ENSAPLG00000002965.1
U3I5C6
CTNNBL1
21
LLPS-Anp-1613
ENSAPLG00000013208.1
U3J0L5
DDX46
22
LLPS-Anp-1287
ENSAPLG00000004281.1
R0JXS7
DGCR8
23
LLPS-Anp-0470
ENSAPLG00000003714.1
U3I7P3
DNAJC17
24
LLPS-Anp-1942
ENSAPLG00000011867.1
U3IWP0
EGF
25
LLPS-Anp-1994
ENSAPLG00000004011.1
R0JPI4
ERH
26
LLPS-Anp-0482
ENSAPLG00000013797.1
U3J2H7
EZH1
27
LLPS-Anp-0501
ENSAPLG00000003717.1
U3I7J0
FAM76B
28
LLPS-Anp-2811
ENSAPLG00000010481.1
U3ISH5
FAM83H
29
LLPS-Anp-2299
ENSAPLG00000002457.1
U3I414
FANCD2
30
LLPS-Anp-2117
ENSAPLG00000004948.1
U3IBH2
FANCI
31
LLPS-Anp-3355
ENSAPLG00000010121.1
R0L5T7
FBXL18
32
LLPS-Anp-0424
ENSAPLG00000014095.1
U3J361
FGFR1
33
LLPS-Anp-1173
ENSAPLG00000015624.1
U3J7M5
FYTTD1
34
LLPS-Anp-2023
ENSAPLG00000004361.1
U3I9L7
GLI3
35
LLPS-Anp-0004
ENSAPLG00000007990.1
U3IK92
GSK3B
36
LLPS-Anp-0086
ENSAPLG00000002715.1
U3I4Q3
HIF1A
37
LLPS-Anp-0425
ENSAPLG00000006030.1
U3IEJ6
HIPK2
38
LLPS-Anp-0560
ENSAPLG00000012019.1
U3IX39
HNRNPA2B1
39
LLPS-Anp-1053
ENSAPLG00000010856.1
U3ITT6
HNRNPK
40
LLPS-Anp-2583
ENSAPLG00000005104.1
U3IBT6
HSPH1
41
LLPS-Anp-0646
ENSAPLG00000016146.1
U3J981
ILF2
42
LLPS-Anp-2826
ENSAPLG00000008747.1
U3IMH3
IVNS1ABP
43
LLPS-Anp-0346
ENSAPLG00000010252.1
R0M1W9
KPNA2
44
LLPS-Anp-0338
ENSAPLG00000004589.1
R0M1Z4
LOC101802533
45
LLPS-Anp-0404
ENSAPLG00000009967.1
U3IR17
LOC101805328
46
LLPS-Anp-0005
ENSAPLG00000007050.1
U3IHI4
LUC7L
47
LLPS-Anp-0358
ENSAPLG00000002642.1
R0K1I0
NONO
48
LLPS-Anp-0759
ENSAPLG00000011228.1
U3IUN6
NSRP1
49
LLPS-Anp-1801
ENSAPLG00000001614.1
U3I1B5
P2RY12
50
LLPS-Anp-3304
ENSAPLG00000009174.1
U3INN4
PABPN1L
51
LLPS-Anp-2233
ENSAPLG00000003763.1
U3I7R6
PLRG1
52
LLPS-Anp-2367
ENSAPLG00000012528.1
U3IYK0
PNN
53
LLPS-Anp-1882
ENSAPLG00000006370.1
U3IFJ4
PPIG
54
LLPS-Anp-0528
ENSAPLG00000010357.1
U3ISA8
PRPF8
55
LLPS-Anp-0609
ENSAPLG00000015841.1
U3J894
PSMA3
56
LLPS-Anp-0721
ENSAPLG00000006246.1
U3IF36
PSPC1
57
LLPS-Anp-0195
ENSAPLG00000006173.1
U3IEZ5
PTBP1
58
LLPS-Anp-1272
ENSAPLG00000015465.1
U3J7C7
RAPGEF1
59
LLPS-Anp-0416
ENSAPLG00000004190.1
R0L699
RBM17
60
LLPS-Anp-1576
ENSAPLG00000010127.1
R0JTL4
RBMX2
61
LLPS-Anp-1978
ENSAPLG00000006231.1
U3IEZ7
RNPS1
62
LLPS-Anp-1085
ENSAPLG00000015486.1
U3J778
SARNP
63
LLPS-Anp-1623
ENSAPLG00000009057.1
U3ING0
SF3A1
64
LLPS-Anp-2399
ENSAPLG00000010966.1
U3ITY5
SF3A2
65
LLPS-Anp-0571
ENSAPLG00000014900.1
U3J5M5
SF3A3
66
LLPS-Anp-1206
ENSAPLG00000003993.1
U3I8E6
SF3B1
67
LLPS-Anp-1726
ENSAPLG00000007006.1
U3IHC7
SMAD3
68
LLPS-Anp-0939
ENSAPLG00000004313.1
R0LG86
SNRNP200
69
LLPS-Anp-2840
ENSAPLG00000015654.1
U3J7N1
SNRNP35
70
LLPS-Anp-0395
ENSAPLG00000005771.1
U3IDM1
SNRPA1
71
LLPS-Anp-1963
ENSAPLG00000008908.1
U3IMW7
SON
72
LLPS-Anp-2648
ENSAPLG00000007134.1
U3IHQ1
SPOP
73
LLPS-Anp-1023
ENSAPLG00000002066.1
U3I390
SRRM1
74
LLPS-Anp-1117
ENSAPLG00000010241.1
U3IRX2
SRSF11
75
LLPS-Anp-2016
ENSAPLG00000013776.1
U3J272
SRSF3
76
LLPS-Anp-0439
ENSAPLG00000006595.1
U3IG39
SRSF4
77
LLPS-Anp-2027
ENSAPLG00000012498.1
U3IYH0
SRSF7
78
LLPS-Anp-2184
ENSAPLG00000008980.1
U3IN41
SUMO1
79
LLPS-Anp-1405
ENSAPLG00000003904.1
U3I859
TRA2B
80
LLPS-Anp-0078
ENSAPLG00000010921.1
U3ITW3
TTC14
81
LLPS-Anp-1855
ENSAPLG00000002348.1
U3I3N0
U2SURP
82
LLPS-Anp-1129
ENSAPLG00000004008.1
U3I8L1
XPO1
83
LLPS-Anp-1175
ENSAPLG00000009921.1
U3IQZ2
YTHDC1
84
LLPS-Anp-0819
ENSAPLG00000012132.1
U3IXG7
ZNF106
85
LLPS-Anp-3014
ENSAPLG00000012245.1
U3IXN2
ZNF131