Amborella trichopoda      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 56 genes.  Reviewed (0 or Unreviewed (56

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Amt-0460
AMTR_s00001p00154470
W1NKD1
AMTR_s00001p00154470
2
LLPS-Amt-2044
AMTR_s00001p00163820
W1NLC6
AMTR_s00001p00163820
3
LLPS-Amt-1120
AMTR_s00001p00268770
W1NMN5
AMTR_s00001p00268770
4
LLPS-Amt-0554
AMTR_s00002p00145180
W1NTW6
AMTR_s00002p00145180
5
LLPS-Amt-0523
AMTR_s00002p00210460
W1P2G3
AMTR_s00002p00210460
6
LLPS-Amt-0872
AMTR_s00002p00251200
W1P153
AMTR_s00002p00251200
7
LLPS-Amt-1644
AMTR_s00002p00263460
W1P0D8
AMTR_s00002p00263460
8
LLPS-Amt-2037
AMTR_s00002p00269760
W1NV22
AMTR_s00002p00269760
9
LLPS-Amt-0231
AMTR_s00003p00196730
W1P0A5
AMTR_s00003p00196730
10
LLPS-Amt-1756
AMTR_s00008p00267630
W1NJ38
AMTR_s00008p00267630
11
LLPS-Amt-1520
AMTR_s00010p00163740
W1NG52
AMTR_s00010p00163740
12
LLPS-Amt-0919
AMTR_s00011p00264930
W1NH28
AMTR_s00011p00264930
13
LLPS-Amt-1248
AMTR_s00012p00256890
W1PDJ9
AMTR_s00012p00256890
14
LLPS-Amt-2066
AMTR_s00013p00217480
W1PQ87
AMTR_s00013p00217480
15
LLPS-Amt-0259
AMTR_s00016p00258810
W1PFM7
AMTR_s00016p00258810
16
LLPS-Amt-1586
AMTR_s00019p00053160
W1PAX4
AMTR_s00019p00053160
17
LLPS-Amt-0877
AMTR_s00021p00243200
W1Q0M4
AMTR_s00021p00243200
18
LLPS-Amt-1004
AMTR_s00022p00114710
W1PUX0
AMTR_s00022p00114710
19
LLPS-Amt-2145
AMTR_s00029p00096200
W1PN16
AMTR_s00029p00096200
20
LLPS-Amt-0254
AMTR_s00029p00164810
W1PHV0
AMTR_s00029p00164810
21
LLPS-Amt-1974
AMTR_s00035p00184080
W1PWD1
AMTR_s00035p00184080
22
LLPS-Amt-0092
AMTR_s00039p00037360
U5CR93
AMTR_s00039p00037360
23
LLPS-Amt-0045
AMTR_s00039p00212570
U5D397
AMTR_s00039p00212570
24
LLPS-Amt-2164
AMTR_s00044p00141950
U5D405
AMTR_s00044p00141950
25
LLPS-Amt-2294
AMTR_s00045p00191080
W1P3M7
AMTR_s00045p00191080
26
LLPS-Amt-0717
AMTR_s00045p00203910
W1P5H6
AMTR_s00045p00203910
27
LLPS-Amt-0040
AMTR_s00045p00207500
W1P5I2
AMTR_s00045p00207500
28
LLPS-Amt-0360
AMTR_s00045p00233670
W1P3X1
AMTR_s00045p00233670
29
LLPS-Amt-0374
AMTR_s00046p00089870
U5D6U7
AMTR_s00046p00089870
30
LLPS-Amt-0179
AMTR_s00054p00127440
U5DCM7
AMTR_s00054p00127440
31
LLPS-Amt-1558
AMTR_s00057p00039750
U5D2U5
AMTR_s00057p00039750
32
LLPS-Amt-2040
AMTR_s00058p00123590
W1PF12
AMTR_s00058p00123590
33
LLPS-Amt-0628
AMTR_s00059p00067090
U5DAR8
AMTR_s00059p00067090
34
LLPS-Amt-0436
AMTR_s00059p00102910
U5D811
AMTR_s00059p00102910
35
LLPS-Amt-1478
AMTR_s00062p00152740
U5D205
AMTR_s00062p00152740
36
LLPS-Amt-0368
AMTR_s00064p00173090
U5DEF3
AMTR_s00064p00173090
37
LLPS-Amt-1050
AMTR_s00067p00056670
U5DED6
AMTR_s00067p00056670
38
LLPS-Amt-1166
AMTR_s00069p00112440
U5DD52
AMTR_s00069p00112440
39
LLPS-Amt-1075
AMTR_s00071p00150630
U5DBT7
AMTR_s00071p00150630
40
LLPS-Amt-0300
AMTR_s00072p00050030
W1NP95
AMTR_s00072p00050030
41
LLPS-Amt-0819
AMTR_s00074p00101590
W1NMV8
AMTR_s00074p00101590
42
LLPS-Amt-0646
AMTR_s00078p00155240
W1PA35
AMTR_s00078p00155240
43
LLPS-Amt-1223
AMTR_s00092p00164660
W1NVE2
AMTR_s00092p00164660
44
LLPS-Amt-1443
AMTR_s00095p00127340
W1NT74
AMTR_s00095p00127340
45
LLPS-Amt-0513
AMTR_s00101p00094580
W1NUY5
AMTR_s00101p00094580
46
LLPS-Amt-2091
AMTR_s00103p00015350
W1NZR1
AMTR_s00103p00015350
47
LLPS-Amt-0614
AMTR_s00119p00125710
W1NNH4
AMTR_s00119p00125710
48
LLPS-Amt-1059
AMTR_s00136p00027550
W1NEU6
AMTR_s00136p00027550
49
LLPS-Amt-1646
AMTR_s00153p00074100
W1PMS2
AMTR_s00153p00074100
50
LLPS-Amt-2280
AMTR_s00155p00052560
W1PCP6
AMTR_s00155p00052560
51
LLPS-Amt-0574
AMTR_s00155p00073880
W1PI77
AMTR_s00155p00073880
52
LLPS-Amt-0583
AMTR_s00173p00035440
W1NNU8
AMTR_s00173p00035440
53
LLPS-Amt-0504
AMTR_s00174p00035020
U5CZB5
AMTR_s00174p00035020
54
LLPS-Amt-0989
AMTR_s00176p00038570
W1PU63
AMTR_s00176p00038570
55
LLPS-Amt-0915
AMTR_s00176p00054790
W1PTL0
AMTR_s00176p00054790
56
LLPS-Amt-0242
AMTR_s00197p00027080
U5D8B9
AMTR_s00197p00027080