Ailuropoda melanoleuca      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 108 genes.  Reviewed (0 or Unreviewed (108

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Aim-0040
ENSAMEG00000000065.1
G1KZM7
2
LLPS-Aim-0129
ENSAMEG00000013225.1
G1M3K9
3
LLPS-Aim-1070
ENSAMEG00000015055.1
G1M944
4
LLPS-Aim-2413
ENSAMEG00000000717.1
G1L1L9
5
LLPS-Aim-1246
ENSAMEG00000005019.1
G1LEP7
AGO2
6
LLPS-Aim-4203
ENSAMEG00000005564.1
G1LG35
AKAP17A
7
LLPS-Aim-0901
ENSAMEG00000017463.1
G1MGG6
ALYREF
8
LLPS-Aim-0960
ENSAMEG00000013452.1
G1M4A8
ANXA10
9
LLPS-Aim-2519
ENSAMEG00000008055.1
G1LND0
ANXA2
10
LLPS-Aim-3522
ENSAMEG00000012578.1
G1M1R0
ATR
11
LLPS-Aim-0534
ENSAMEG00000017176.1
G1MFL3
BCAS2
12
LLPS-Aim-0416
ENSAMEG00000007048.1
G1LKF5
BCL2L2-PABPN1
13
LLPS-Aim-3055
ENSAMEG00000016061.1
G1MC89
C9orf78
14
LLPS-Aim-0935
ENSAMEG00000011015.1
G1LX00
CARM1
15
LLPS-Aim-3655
ENSAMEG00000007764.1
G1LMI1
CASC3
16
LLPS-Aim-0833
ENSAMEG00000003092.1
G1L8P6
CCNL1
17
LLPS-Aim-1840
ENSAMEG00000011685.1
G1LZ29
CDC5L
18
LLPS-Aim-0842
ENSAMEG00000003520.1
G1LA17
CDK1
19
LLPS-Aim-3789
ENSAMEG00000003163.1
G1L901
CDK7
20
LLPS-Aim-1467
ENSAMEG00000015052.1
G1M948
CDK9
21
LLPS-Aim-2196
ENSAMEG00000016835.1
G1MEK8
CDKL5
22
LLPS-Aim-0365
ENSAMEG00000017098.1
G1MFE4
COP1
23
LLPS-Aim-0268
ENSAMEG00000005335.1
D2H8N0
CSNK1A1
24
LLPS-Aim-0020
ENSAMEG00000012271.1
G1M0T3
CTNNBL1
25
LLPS-Aim-2974
ENSAMEG00000009508.1
G1LSG2
DDX39B
26
LLPS-Aim-0891
ENSAMEG00000017873.1
G1MHP6
DDX46
27
LLPS-Aim-2595
ENSAMEG00000011732.1
G1LZ47
DGCR8
28
LLPS-Aim-1697
ENSAMEG00000013494.1
D2HFZ7
DNAJB1
29
LLPS-Aim-2165
ENSAMEG00000016923.1
G1MEU8
DNAJC17
30
LLPS-Aim-4396
ENSAMEG00000014957.1
G1M8V3
EGF
31
LLPS-Aim-0210
ENSAMEG00000014529.1
D2H5Q6
ERH
32
LLPS-Aim-2555
ENSAMEG00000006766.1
G1LJS4
EZH1
33
LLPS-Aim-4182
ENSAMEG00000008044.1
G1LN47
FAM76B
34
LLPS-Aim-0790
ENSAMEG00000016051.1
G1MCF3
FANCD2
35
LLPS-Aim-3647
ENSAMEG00000012957.1
G1M2X5
FANCI
36
LLPS-Aim-3509
ENSAMEG00000006596.1
G1LJ37
FBXL18
37
LLPS-Aim-3848
ENSAMEG00000015496.1
G1MAQ3
FGFR1
38
LLPS-Aim-4183
ENSAMEG00000017530.1
G1MGN8
FRMD8
39
LLPS-Aim-3756
ENSAMEG00000004083.1
G1LBP0
FYTTD1
40
LLPS-Aim-0887
ENSAMEG00000008405.1
D2GYG0
GLI3
41
LLPS-Aim-0360
ENSAMEG00000006975.1
G1LKA6
GSK3B
42
LLPS-Aim-2498
ENSAMEG00000003105.1
G1L8W4
HIF1A
43
LLPS-Aim-2600
ENSAMEG00000008615.1
G1LPW8
HIF3A
44
LLPS-Aim-1321
ENSAMEG00000005983.1
G1LHD9
HNRNPA2B1
45
LLPS-Aim-0489
ENSAMEG00000003926.1
G1LB97
HNRNPK
46
LLPS-Aim-3321
ENSAMEG00000008784.1
G1LQF0
HSPH1
47
LLPS-Aim-2701
ENSAMEG00000012155.1
G1M0F0
ILF2
48
LLPS-Aim-2018
ENSAMEG00000011152.1
G1LXI8
ILF3
49
LLPS-Aim-1976
ENSAMEG00000013618.1
D2HFM8
IVNS1ABP
50
LLPS-Aim-0996
ENSAMEG00000018411.1
D2HQA5
KPNA2
51
LLPS-Aim-1373
ENSAMEG00000006888.1
G1LK13
LUC7L
52
LLPS-Aim-3778
ENSAMEG00000015828.1
G1MBI6
NAGK
53
LLPS-Aim-3948
ENSAMEG00000000173.1
G1KZZ1
NKAP
54
LLPS-Aim-0480
ENSAMEG00000016057.1
G1MC92
NONO
55
LLPS-Aim-1439
ENSAMEG00000013962.1
G1M5V4
NOSIP
56
LLPS-Aim-1218
ENSAMEG00000011166.1
G1LXI2
NR5A1
57
LLPS-Aim-1610
ENSAMEG00000004028.1
G1LBH5
NSRP1
58
LLPS-Aim-1428
ENSAMEG00000001435.1
G1L3Q9
NUAK2
59
LLPS-Aim-0329
ENSAMEG00000006237.1
G1LIC3
NXF1
60
LLPS-Aim-1339
ENSAMEG00000016290.1
G1MCX8
OGG1
61
LLPS-Aim-4266
ENSAMEG00000019091.1
G1MLB2
P2RY12
62
LLPS-Aim-1991
ENSAMEG00000016094.1
G1MCC0
PCBP1
63
LLPS-Aim-0259
ENSAMEG00000018456.1
G1MJH6
PLRG1
64
LLPS-Aim-2079
ENSAMEG00000003904.1
G1LB43
PNN
65
LLPS-Aim-2158
ENSAMEG00000010574.1
D2H4C9
PPIG
66
LLPS-Aim-1036
ENSAMEG00000007375.1
G1LLH4
PRPF19
67
LLPS-Aim-0760
ENSAMEG00000007940.1
D2H8C5
PRPF8
68
LLPS-Aim-2237
ENSAMEG00000002498.1
G1L6X6
PSMA3
69
LLPS-Aim-1323
ENSAMEG00000017420.1
D2HT12
PSPC1
70
LLPS-Aim-2052
ENSAMEG00000002867.1
G1L844
PTBP1
71
LLPS-Aim-2076
ENSAMEG00000016435.1
G1MDI0
RAPGEF1
72
LLPS-Aim-0490
ENSAMEG00000002107.1
D2HEC2
RBM17
73
LLPS-Aim-2337
ENSAMEG00000007322.1
G1LLB0
RBM23
74
LLPS-Aim-1919
ENSAMEG00000014865.1
G1M8J5
RBMX2
75
LLPS-Aim-3456
ENSAMEG00000017653.1
G1MH09
RNF151
76
LLPS-Aim-2315
ENSAMEG00000017861.1
G1MHN0
RNPS1
77
LLPS-Aim-3139
ENSAMEG00000011769.1
G1LZ96
SARNP
78
LLPS-Aim-0740
ENSAMEG00000007737.1
G1LMG5
SF3A1
79
LLPS-Aim-2314
ENSAMEG00000005469.1
D2HTL8
SF3A2
80
LLPS-Aim-2739
ENSAMEG00000001262.1
G1L393
SF3A3
81
LLPS-Aim-0175
ENSAMEG00000013809.1
G1M5F2
SF3B1
82
LLPS-Aim-2835
ENSAMEG00000000815.1
G1L1X3
SFPQ
83
LLPS-Aim-0438
ENSAMEG00000003318.1
G1L9G4
SMAD3
84
LLPS-Aim-2016
ENSAMEG00000008996.1
G1LR17
SNRNP200
85
LLPS-Aim-3145
ENSAMEG00000019650.1
D2GVZ7
SNRNP35
86
LLPS-Aim-1925
ENSAMEG00000014468.1
G1M7E6
SNRNP70
87
LLPS-Aim-1499
ENSAMEG00000012247.1
G1M0N7
SNRPA
88
LLPS-Aim-3038
ENSAMEG00000007128.1
G1LKN3
SNRPA1
89
LLPS-Aim-0966
ENSAMEG00000016500.1
D2I1I2
SNRPB2
90
LLPS-Aim-2471
ENSAMEG00000014868.1
G1M8J9
SON
91
LLPS-Aim-0973
ENSAMEG00000012318.1
G1M0X8
SPOP
92
LLPS-Aim-1712
ENSAMEG00000018018.1
G1MI56
SRRM2
93
LLPS-Aim-0087
ENSAMEG00000002635.1
G1L799
SRSF1
94
LLPS-Aim-1519
ENSAMEG00000000268.1
G1L082
SRSF3
95
LLPS-Aim-0701
ENSAMEG00000015988.1
G1MC12
SRSF7
96
LLPS-Aim-3816
ENSAMEG00000006266.1
G1LID7
STAT3
97
LLPS-Aim-1790
ENSAMEG00000001976.1
G1L5G1
TAP1
98
LLPS-Aim-0770
ENSAMEG00000004381.1
G1LCI9
TGFBR1
99
LLPS-Aim-0326
ENSAMEG00000016751.1
G1MEC0
TRA2B
100
LLPS-Aim-2599
ENSAMEG00000011013.1
D2GUD9
TTC14
101
LLPS-Aim-0003
ENSAMEG00000003864.1
G1LB27
U2AF2
102
LLPS-Aim-0408
ENSAMEG00000012757.1
G1M2A0
U2SURP
103
LLPS-Aim-0057
ENSAMEG00000003460.1
G1L9V0
XPO1
104
LLPS-Aim-0321
ENSAMEG00000005688.1
G1LGJ3
YTHDC1
105
LLPS-Aim-1580
ENSAMEG00000000838.1
G1L200
ZC3H11A
106
LLPS-Aim-3626
ENSAMEG00000015798.1
G1MBF6
ZNF106
107
LLPS-Aim-2730
ENSAMEG00000003882.1
G1LB25
ZNF131
108
LLPS-Aim-1796
ENSAMEG00000007811.1
G1LMI0
ZNF688