Absidia glauca      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 40 genes.  Reviewed (0 or Unreviewed (40

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Abg-0411
SAL95032
A0A163IS69
ABSGL_00331.1 scaffold 486
2
LLPS-Abg-0000
SAL95439
A0A163KQ35
ABSGL_00768.1 scaffold 958
3
LLPS-Abg-1351
SAL95689
A0A168KYG7
ABSGL_01030.1 scaffold 1223
4
LLPS-Abg-0946
SAL95726
A0A168KZ32
ABSGL_01067.1 scaffold 1223
5
LLPS-Abg-0384
SAL97089
A0A168LMC0
ABSGL_02547.1 scaffold 3452
6
LLPS-Abg-1029
SAL97352
A0A163J5U1
ABSGL_02844.1 scaffold 4007
7
LLPS-Abg-0317
SAL97393
A0A163J5Z0
ABSGL_02887.1 scaffold 4049
8
LLPS-Abg-0763
SAL97949
A0A163KSC2
ABSGL_03476.1 scaffold 4609
9
LLPS-Abg-0883
SAL98065
A0A168M771
ABSGL_03592.1 scaffold 4609
10
LLPS-Abg-0136
SAL98609
A0A168MIZ9
ABSGL_04163.1 scaffold 5159
11
LLPS-Abg-1214
SAL98941
A0A168MPM5
ABSGL_04512.1 scaffold 5475
12
LLPS-Abg-0268
SAL98995
A0A163J9T9
ABSGL_04566.1 scaffold 5475
13
LLPS-Abg-0451
SAL99361
A0A168MWN1
ABSGL_04970.1 scaffold 6254
14
LLPS-Abg-0849
SAL99368
A0A168MWW0
ABSGL_04981.1 scaffold 6267
15
LLPS-Abg-1094
SAM00116
A0A168N9Y1
ABSGL_05791.1 scaffold 7482
16
LLPS-Abg-0330
SAM01121
A0A163JFX9
ABSGL_06858.1 scaffold 8678
17
LLPS-Abg-0249
SAM01440
A0A163KY65
ABSGL_07181.1 scaffold 8717
18
LLPS-Abg-1246
SAM01942
A0A168P8F7
ABSGL_07692.1 scaffold 8929
19
LLPS-Abg-1894
SAM02137
A0A168PCA5
ABSGL_07900.1 scaffold 9181
20
LLPS-Abg-0815
SAM02349
A0A163M8K9
ABSGL_08128.1 scaffold 9591
21
LLPS-Abg-0780
SAM02414
A0A163JT90
ABSGL_08200.1 scaffold 9707
22
LLPS-Abg-0431
SAM02511
A0A163JQI7
ABSGL_08304.1 scaffold 9741
23
LLPS-Abg-0181
SAM03270
A0A163L0V4
ABSGL_09088.1 scaffold 10677
24
LLPS-Abg-0375
SAM04111
A0A163JZ81
ABSGL_09971.1 scaffold 11783
25
LLPS-Abg-0516
SAM05565
A0A168QU71
ABSGL_11440.1 scaffold 12295
26
LLPS-Abg-1279
SAM05727
A0A168QXJ6
ABSGL_11602.1 scaffold 12295
27
LLPS-Abg-0356
SAM05984
A0A168R2E8
ABSGL_11860.1 scaffold 12357
28
LLPS-Abg-1304
SAM06331
A0A163K9G0
ABSGL_12219.1 scaffold 12718
29
LLPS-Abg-0851
SAM07920
A0A170APV1
ABSGL_13578.1 scaffold 14267
30
LLPS-Abg-0616
SAM08043
A0A163KHN9
ABSGL_13701.1 scaffold 14267
31
LLPS-Abg-1501
SAM08132
A0A168SA20
ABSGL_13794.1 scaffold 14339
32
LLPS-Abg-0708
SAM08183
A0A163KI48
ABSGL_13845.1 scaffold 14339
33
LLPS-Abg-0250
SAM08568
A0A168SKQ7
ABSGL_14231.1 scaffold 14385
34
LLPS-Abg-0118
SAM08641
A0A163MTY2
ABSGL_14304.1 scaffold 14385
35
LLPS-Abg-0143
SAM08667
A0A168SMW1
ABSGL_14330.1 scaffold 14385
36
LLPS-Abg-1586
SAM08949
A0A168SUA5
ABSGL_14615.1 scaffold 14663
37
LLPS-Abg-1340
SAM09025
A0A168SVV0
ABSGL_14699.1 scaffold 14966
38
LLPS-Abg-0229
SAM09091
A0A163MV99
ABSGL_14765.1 scaffold 14966
39
LLPS-Abg-1352
SAM09346
A0A163KAF6
ABSGL_15022.1 scaffold 15162
40
LLPS-Abg-1176
SAM09798
A0A168TBN1
ABSGL_15507.1 scaffold 17607