Verticillium dahliae      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 38 genes.  Reviewed (0 or Unreviewed (38

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Ved-0811
VDAG_01229
G2WTV6
ADK1
2
LLPS-Ved-0414
VDAG_00629
G2WQI7
LSM4
3
LLPS-Ved-0657
VDAG_00094
G2WRB1
VDAG_00094
4
LLPS-Ved-1424
VDAG_00920
G2WSZ7
VDAG_00920
5
LLPS-Ved-0689
VDAG_01108
G2WTI5
VDAG_01108
6
LLPS-Ved-0369
VDAG_01206
G2WTT3
VDAG_01206
7
LLPS-Ved-0350
VDAG_01508
G2WUN5
VDAG_01508
8
LLPS-Ved-0859
VDAG_01629
G2WSN3
VDAG_01629
9
LLPS-Ved-0007
VDAG_01763
G2WVX7
VDAG_01763
10
LLPS-Ved-0814
VDAG_01787
G2WW01
VDAG_01787
11
LLPS-Ved-0697
VDAG_02322
G2WVI1
VDAG_02322
12
LLPS-Ved-0572
VDAG_02565
G2WY83
VDAG_02565
13
LLPS-Ved-0670
VDAG_03223
G2WYY1
VDAG_03223
14
LLPS-Ved-0390
VDAG_04056
G2X1C7
VDAG_04056
15
LLPS-Ved-0940
VDAG_04254
G2X1T0
VDAG_04254
16
LLPS-Ved-0623
VDAG_04456
G2X2D2
VDAG_04456
17
LLPS-Ved-0443
VDAG_04662
G2X3S5
VDAG_04662
18
LLPS-Ved-0172
VDAG_04996
G2X4B4
VDAG_04996
19
LLPS-Ved-0255
VDAG_06114
G2X8H3
VDAG_06114
20
LLPS-Ved-1126
VDAG_06193
G2X8Q2
VDAG_06193
21
LLPS-Ved-1331
VDAG_06306
G2X748
VDAG_06306
22
LLPS-Ved-0240
VDAG_06489
G2X7N1
VDAG_06489
23
LLPS-Ved-0374
VDAG_06639
G2X907
VDAG_06639
24
LLPS-Ved-0557
VDAG_06648
G2X916
VDAG_06648
25
LLPS-Ved-0694
VDAG_06653
G2X921
VDAG_06653
26
LLPS-Ved-0735
VDAG_06804
G2X9H2
VDAG_06804
27
LLPS-Ved-1162
VDAG_07441
G2XB11
VDAG_07441
28
LLPS-Ved-1265
VDAG_07445
G2XB15
VDAG_07445
29
LLPS-Ved-0053
VDAG_07456
G2XB26
VDAG_07456
30
LLPS-Ved-0410
VDAG_08347
G2XDW5
VDAG_08347
31
LLPS-Ved-0725
VDAG_08621
G2XEN6
VDAG_08621
32
LLPS-Ved-1362
VDAG_09443
G2XH11
VDAG_09443
33
LLPS-Ved-0894
VDAG_09450
G2XH18
VDAG_09450
34
LLPS-Ved-1159
VDAG_09749
G2XHJ5
VDAG_09749
35
LLPS-Ved-0200
VDAG_09875
G2XI93
VDAG_09875
36
LLPS-Ved-0037
VDAG_09905
G2XIC3
VDAG_09905
37
LLPS-Ved-0800
VDAG_10000
G2XIL8
VDAG_10000
38
LLPS-Ved-1404
VDAG_10416
G2XJT4
VDAG_10416