Trichoderma reesei      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 36 genes.  Reviewed (0 or Unreviewed (36

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Trr-1570
TRIREDRAFT_120539
G0RD36
ADK1
2
LLPS-Trr-0089
TRIREDRAFT_108090
G0RLE3
LSM4
3
LLPS-Trr-1143
TRIREDRAFT_51212
G0RSJ8
rpl5
4
LLPS-Trr-1185
TRIREDRAFT_45998
G0RE22
snf1
5
LLPS-Trr-0913
TRIREDRAFT_105054
G0RDB0
TRIREDRAFT_105054
6
LLPS-Trr-0953
TRIREDRAFT_106108
G0RGC5
TRIREDRAFT_106108
7
LLPS-Trr-0014
TRIREDRAFT_106962
G0RIV8
TRIREDRAFT_106962
8
LLPS-Trr-1085
TRIREDRAFT_120605
G0RDM8
TRIREDRAFT_120605
9
LLPS-Trr-0845
TRIREDRAFT_120801
G0RDI7
TRIREDRAFT_120801
10
LLPS-Trr-1032
TRIREDRAFT_121534
G0RHV1
TRIREDRAFT_121534
11
LLPS-Trr-0207
TRIREDRAFT_121733
G0RJ06
TRIREDRAFT_121733
12
LLPS-Trr-0482
TRIREDRAFT_21924
G0RF69
TRIREDRAFT_21924
13
LLPS-Trr-0940
TRIREDRAFT_3671
G0RHW6
TRIREDRAFT_3671
14
LLPS-Trr-1297
TRIREDRAFT_44290
G0R919
TRIREDRAFT_44290
15
LLPS-Trr-1281
TRIREDRAFT_52553
G0RWF8
TRIREDRAFT_52553
16
LLPS-Trr-0302
TRIREDRAFT_53402
G0R7Z7
TRIREDRAFT_53402
17
LLPS-Trr-1206
TRIREDRAFT_57252
G0RE34
TRIREDRAFT_57252
18
LLPS-Trr-0837
TRIREDRAFT_61595
G0RJ56
TRIREDRAFT_61595
19
LLPS-Trr-0642
TRIREDRAFT_62120
G0RJH7
TRIREDRAFT_62120
20
LLPS-Trr-0168
TRIREDRAFT_66436
G0RR34
TRIREDRAFT_66436
21
LLPS-Trr-1367
TRIREDRAFT_69686
G0RVT6
TRIREDRAFT_69686
22
LLPS-Trr-0593
TRIREDRAFT_70305
G0RWH0
TRIREDRAFT_70305
23
LLPS-Trr-0902
TRIREDRAFT_74233
G0R9C3
TRIREDRAFT_74233
24
LLPS-Trr-0586
TRIREDRAFT_74241
G0R9D6
TRIREDRAFT_74241
25
LLPS-Trr-0246
TRIREDRAFT_74318
G0R6Y7
TRIREDRAFT_74318
26
LLPS-Trr-1195
TRIREDRAFT_75184
G0RBI8
TRIREDRAFT_75184
27
LLPS-Trr-0385
TRIREDRAFT_75794
G0RDS0
TRIREDRAFT_75794
28
LLPS-Trr-0213
TRIREDRAFT_77440
G0RHY2
TRIREDRAFT_77440
29
LLPS-Trr-0549
TRIREDRAFT_78158
G0RKF9
TRIREDRAFT_78158
30
LLPS-Trr-0453
TRIREDRAFT_78439
G0RKV7
TRIREDRAFT_78439
31
LLPS-Trr-0397
TRIREDRAFT_79315
G0RMT8
TRIREDRAFT_79315
32
LLPS-Trr-0204
TRIREDRAFT_79686
G0RNC4
TRIREDRAFT_79686
33
LLPS-Trr-0515
TRIREDRAFT_80398
G0RR14
TRIREDRAFT_80398
34
LLPS-Trr-0827
TRIREDRAFT_80691
G0RRV7
TRIREDRAFT_80691
35
LLPS-Trr-1438
TRIREDRAFT_81785
G0RUW8
TRIREDRAFT_81785
36
LLPS-Trr-0176
TRIREDRAFT_81861
G0RV11
TRIREDRAFT_81861