Takifugu rubripes      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 81 genes.  Reviewed (0 or Unreviewed (81

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Tar-0246
ENSTRUG00000006269.2
P61944
2
LLPS-Tar-0499
ENSTRUG00000025576.1
A0A3B5JWN6
3
LLPS-Tar-0724
ENSTRUG00000021548.1
A0A3B5K9S8
4
LLPS-Tar-0889
ENSTRUG00000017345.2
H2V5F6
5
LLPS-Tar-3788
ENSTRUG00000003170.2
H2S4W1
6
LLPS-Tar-1932
ENSTRUG00000007370.2
H2T0M8
ago2
7
LLPS-Tar-0250
ENSTRUG00000001235.2
H2RRV5
ak2
8
LLPS-Tar-0650
ENSTRUG00000016801.2
H2V1G0
atxn2
9
LLPS-Tar-0472
ENSTRUG00000013307.2
H2UAB0
aurka
10
LLPS-Tar-3292
ENSTRUG00000018591.2
H2UVZ0
camk2b
11
LLPS-Tar-2465
ENSTRUG00000012203.2
H2U1U1
cbx1
12
LLPS-Tar-0377
ENSTRUG00000023866.1
A0A3B5KDF0
cbx2
13
LLPS-Tar-1959
ENSTRUG00000003115.2
H2S4H2
cbx5
14
LLPS-Tar-2476
ENSTRUG00000000552.2
H2RMD8
ccnt1
15
LLPS-Tar-3266
ENSTRUG00000010233.2
H2TM74
cdk7
16
LLPS-Tar-1531
ENSTRUG00000008976.2
H2TD26
cdk9
17
LLPS-Tar-3261
ENSTRUG00000010187.2
A0A3B5K9X3
cirbp
18
LLPS-Tar-0269
ENSTRUG00000015453.2
H2URF6
ckap5
19
LLPS-Tar-3079
ENSTRUG00000022887.1
A0A3B5JYH1
cpeb2
20
LLPS-Tar-1357
ENSTRUG00000004323.2
H2SCX1
cstf2
21
LLPS-Tar-2179
ENSTRUG00000022353.1
A0A3B5KHG9
daxx
22
LLPS-Tar-1050
ENSTRUG00000002467.2
H2RZY2
dazap1
23
LLPS-Tar-0617
ENSTRUG00000003429.2
H2S6N4
dcp1a
24
LLPS-Tar-1154
ENSTRUG00000011848.2
A0A3B5KEL6
ddx6
25
LLPS-Tar-3672
ENSTRUG00000017849.2
H2V988
dlgap1
26
LLPS-Tar-3086
ENSTRUG00000006869.2
H2SWR8
dyrk1a
27
LLPS-Tar-1369
ENSTRUG00000017078.2
H2V3H2
edc3
28
LLPS-Tar-0788
ENSTRUG00000011593.2
H2TX97
eif4g3
29
LLPS-Tar-2522
ENSTRUG00000007941.2
A0A3B5K2D6
esrp2
30
LLPS-Tar-0017
ENSTRUG00000004408.2
A0A3B5KQ98
fbl
31
LLPS-Tar-1404
ENSTRUG00000020580.1
A0A3B5K6U8
gar1
32
LLPS-Tar-1144
ENSTRUG00000009789.2
A0A3B5JYA3
gnl2
33
LLPS-Tar-3979
ENSTRUG00000008254.2
H2T7L9
grb2
34
LLPS-Tar-0390
ENSTRUG00000025814.1
A0A3B5KAF5
homer3
35
LLPS-Tar-0738
ENSTRUG00000007387.2
A0A3B5JV16
ipo5
36
LLPS-Tar-0586
ENSTRUG00000008630.2
H2TAF8
kpna2
37
LLPS-Tar-0074
ENSTRUG00000000542.2
A0A3B5K7P8
kpnb1
38
LLPS-Tar-3043
ENSTRUG00000023625.1
A0A3B5KPC4
LOC101061771
39
LLPS-Tar-3942
ENSTRUG00000023619.1
A0A3B5KLW9
LOC101061790
40
LLPS-Tar-2836
ENSTRUG00000018585.2
H2VEE6
LOC101062087
41
LLPS-Tar-3791
ENSTRUG00000014739.2
H2UL58
LOC101063191
42
LLPS-Tar-1670
ENSTRUG00000018450.2
H2VDE0
LOC101066421
43
LLPS-Tar-3718
ENSTRUG00000021399.1
A0A3B5KDY3
LOC101068354
44
LLPS-Tar-0448
ENSTRUG00000016634.2
A0A3B5KGB7
LOC101069458
45
LLPS-Tar-0523
ENSTRUG00000011335.2
H2TV99
LOC101071804
46
LLPS-Tar-1200
ENSTRUG00000012645.2
H2U4Y5
LOC101072838
47
LLPS-Tar-1264
ENSTRUG00000005571.2
A0A3B5KIP3
LOC101073809
48
LLPS-Tar-0880
ENSTRUG00000005680.2
H2SMX5
LOC101074799
49
LLPS-Tar-a1000
ENSTRUG00000015442.2
H2URA5
LOC101076067
50
LLPS-Tar-0701
ENSTRUG00000004447.2
H2SDU3
LOC101077097
51
LLPS-Tar-0915
ENSTRUG00000021494.1
A0A3B5K0I1
LOC101079154
52
LLPS-Tar-2446
ENSTRUG00000001050.2
H2RQP7
LOC101079186
53
LLPS-Tar-0408
ENSTRUG00000016826.2
H2V1M8
LOC101079306
54
LLPS-Tar-3395
ENSTRUG00000004651.2
Q8QGU8
LOC445899
55
LLPS-Tar-1167
ENSTRUG00000021737.1
A0A3B5K599
lsm4
56
LLPS-Tar-0898
ENSTRUG00000025106.1
A0A3B5K5D5
map1lc3b
57
LLPS-Tar-0806
ENSTRUG00000017728.2
A0A3B5K239
nck1
58
LLPS-Tar-2510
ENSTRUG00000000175.2
H2RJP9
nphs1
59
LLPS-Tar-1843
ENSTRUG00000024003.1
A0A3B5KH27
npm1
60
LLPS-Tar-1566
ENSTRUG00000010163.2
H2TLM9
nup153
61
LLPS-Tar-0530
ENSTRUG00000017712.2
H2V866
NUP62
62
LLPS-Tar-0490
ENSTRUG00000002669.2
H2S1E7
nup98
63
LLPS-Tar-1585
ENSTRUG00000011577.2
H2TX53
pabpc1
64
LLPS-Tar-0811
ENSTRUG00000014787.2
H2ULF7
PLK1
65
LLPS-Tar-0428
ENSTRUG00000008121.2
H2T6K1
pnpla6
66
LLPS-Tar-1555
ENSTRUG00000016384.2
H2UY55
prkaa2
67
LLPS-Tar-1775
ENSTRUG00000012105.2
H2U127
prmt1
68
LLPS-Tar-1481
ENSTRUG00000011360.2
A0A3B5KGS0
ptbp1
69
LLPS-Tar-1018
ENSTRUG00000020940.1
A0A3B5K9S6
rbfox1
70
LLPS-Tar-0626
ENSTRUG00000017075.2
A0A3B5JY71
rpl23a
71
LLPS-Tar-2588
ENSTRUG00000000524.2
H2RM82
RPL5 (1 of many)
72
LLPS-Tar-2798
ENSTRUG00000018124.2
H2VB04
sgo1
73
LLPS-Tar-2387
ENSTRUG00000013953.2
H2UFF8
SOS1
74
LLPS-Tar-1640
ENSTRUG00000023872.1
A0A3B5KH04
surf6
75
LLPS-Tar-0141
ENSTRUG00000007778.2
H2T3U0
syn1
76
LLPS-Tar-0125
ENSTRUG00000012070.2
A0A3B5K5V3
tardbp
77
LLPS-Tar-0015
ENSTRUG00000015136.2
A0A3B5KTG3
tia1
78
LLPS-Tar-0803
ENSTRUG00000020927.1
A0A3B5K5P6
TIAL1
79
LLPS-Tar-1950
ENSTRUG00000018491.2
H2VDP0
tnpo1
80
LLPS-Tar-2919
ENSTRUG00000018309.2
H2VC98
ubxn6
81
LLPS-Tar-3313
ENSTRUG00000021140.1
A0A3B5JYG3
znf207