Latimeria chalumnae      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 89 genes.  Reviewed (0 or Unreviewed (89

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Lac-0065
ENSLACG00000013460.1
H3B070
2
LLPS-Lac-0069
ENSLACG00000010251.1
H3APS7
3
LLPS-Lac-0334
ENSLACG00000010652.1
H3AR28
4
LLPS-Lac-2729
ENSLACG00000000628.1
H2ZTI1
5
LLPS-Lac-2989
ENSLACG00000007893.1
H3AH17
6
LLPS-Lac-3121
ENSLACG00000011242.1
H3ASZ3
7
LLPS-Lac-2465
ENSLACG00000001277.1
H2ZVK6
AGO2
8
LLPS-Lac-3641
ENSLACG00000014380.2
M3XK55
AK2
9
LLPS-Lac-2015
ENSLACG00000001469.1
H2ZW72
APP
10
LLPS-Lac-1933
ENSLACG00000006023.2
M3XII1
ATXN2L
11
LLPS-Lac-1535
ENSLACG00000016221.2
H3B947
AURKA
12
LLPS-Lac-0892
ENSLACG00000003836.1
H3A3U1
C9orf72
13
LLPS-Lac-2103
ENSLACG00000011877.1
H3AV19
CAMK2G
14
LLPS-Lac-2290
ENSLACG00000010753.1
H3ARE6
CBX1
15
LLPS-Lac-2505
ENSLACG00000018020.1
H3BF32
CBX2
16
LLPS-Lac-2915
ENSLACG00000013947.2
H3B1R7
CBX5
17
LLPS-Lac-0775
ENSLACG00000017559.1
H3BDK5
CCNT1
18
LLPS-Lac-0143
ENSLACG00000016088.1
H3B8P3
CDK7
19
LLPS-Lac-0113
ENSLACG00000017060.1
H3BBX6
CDK9
20
LLPS-Lac-3256
ENSLACG00000014490.1
H3B3H3
CIRBP
21
LLPS-Lac-2141
ENSLACG00000010027.1
H3AP26
CPEB2
22
LLPS-Lac-2317
ENSLACG00000015927.1
H3B855
CSTF2
23
LLPS-Lac-0136
ENSLACG00000006679.1
H3AD13
CTTN
24
LLPS-Lac-2937
ENSLACG00000001090.1
H2ZUZ5
DAXX
25
LLPS-Lac-1168
ENSLACG00000009693.1
H3AMZ3
DAZAP1
26
LLPS-Lac-0485
ENSLACG00000017357.1
H3BCX0
DCP1B
27
LLPS-Lac-0435
ENSLACG00000000580.1
H2ZTC9
DCP2
28
LLPS-Lac-2122
ENSLACG00000013289.1
H3AZN0
DLG4
29
LLPS-Lac-1962
ENSLACG00000006045.1
H3AAZ0
DLGAP1
30
LLPS-Lac-1519
ENSLACG00000008606.2
H3AJD9
DYRK1A
31
LLPS-Lac-0801
ENSLACG00000017636.1
H3BDU3
EIF4G3
32
LLPS-Lac-0514
ENSLACG00000017574.2
H3BDM2
ESRP2
33
LLPS-Lac-1061
ENSLACG00000008350.1
H3AIJ6
EWSR1
34
LLPS-Lac-2134
ENSLACG00000005358.1
H3A8R5
FMR1
35
LLPS-Lac-1227
ENSLACG00000004570.1
H3A671
FUS
36
LLPS-Lac-3090
ENSLACG00000012800.2
H3AY24
FYN
37
LLPS-Lac-1202
ENSLACG00000003306.1
H3A243
GAR1
38
LLPS-Lac-1254
ENSLACG00000016998.2
H3BBQ4
GNL2
39
LLPS-Lac-0703
ENSLACG00000000591.1
H2ZTE1
GRB2
40
LLPS-Lac-3392
ENSLACG00000001700.1
H2ZWY2
GSPT1
41
LLPS-Lac-1966
ENSLACG00000013754.2
H3B152
HNRNPA1
42
LLPS-Lac-2299
ENSLACG00000013590.1
H3B0L4
HNRNPA2B1
43
LLPS-Lac-2716
ENSLACG00000008189.1
H3AI14
HNRNPA3
44
LLPS-Lac-1325
ENSLACG00000005306.2
H3A8K6
HNRNPD
45
LLPS-Lac-3225
ENSLACG00000008840.1
H3AK58
HOMER3
46
LLPS-Lac-2315
ENSLACG00000015338.2
H3B692
IPO5
47
LLPS-Lac-0280
ENSLACG00000013531.2
H3B0E6
KPNA7
48
LLPS-Lac-1444
ENSLACG00000017620.1
H3BDS6
KPNB1
49
LLPS-Lac-2205
ENSLACG00000012673.2
H3AXM8
LBR
50
LLPS-Lac-1000
ENSLACG00000018978.2
H3BI79
LOC102347472
51
LLPS-Lac-0878
ENSLACG00000005184.1
H3A865
LOC102348363
52
LLPS-Lac-3816
ENSLACG00000007207.1
H3AER8
LOC102351696
53
LLPS-Lac-0264
ENSLACG00000017750.1
H3BE74
LOC102355894
54
LLPS-Lac-3054
ENSLACG00000004852.1
H3A734
LOC102357229
55
LLPS-Lac-0867
ENSLACG00000019044.1
H3BIF3
LOC102362544
56
LLPS-Lac-0870
ENSLACG00000017362.1
H3BCX6
LOC102362575
57
LLPS-Lac-2841
ENSLACG00000015214.1
H3B5V2
LOC102367138
58
LLPS-Lac-1217
ENSLACG00000015861.2
H3B7Y2
LSM4
59
LLPS-Lac-3307
ENSLACG00000010397.1
H3AQ89
MAP1LC3B
60
LLPS-Lac-2340
ENSLACG00000014454.1
H3B3D6
MAPT
61
LLPS-Lac-0600
ENSLACG00000001427.1
H2ZW27
MASTL
62
LLPS-Lac-2781
ENSLACG00000005097.1
H3A7W9
NBR1
63
LLPS-Lac-1506
ENSLACG00000003655.1
H3A391
NCK1
64
LLPS-Lac-1785
ENSLACG00000014233.1
H3B2N8
NUP62CL
65
LLPS-Lac-0214
ENSLACG00000002694.1
H3A040
NUP98
66
LLPS-Lac-0490
ENSLACG00000004395.2
H3A5M3
PABPC1
67
LLPS-Lac-4092
ENSLACG00000011423.2
H3ATJ8
PKLR
68
LLPS-Lac-1339
ENSLACG00000004130.2
H3A4R9
PLK1
69
LLPS-Lac-2752
ENSLACG00000010309.2
H3APZ1
PNPLA6
70
LLPS-Lac-0874
ENSLACG00000012071.1
H3AVP5
POLR2A
71
LLPS-Lac-0992
ENSLACG00000003515.1
H3A2S9
PRKAA1
72
LLPS-Lac-0202
ENSLACG00000017467.1
H3BD96
PRMT1
73
LLPS-Lac-0667
ENSLACG00000010762.2
H3ARF5
PSPC1
74
LLPS-Lac-0574
ENSLACG00000003632.2
H3A365
PTBP1
75
LLPS-Lac-1296
ENSLACG00000010794.2
H3ARJ1
RPL5
76
LLPS-Lac-1226
ENSLACG00000004253.1
H3A563
SHANK3
77
LLPS-Lac-2135
ENSLACG00000003896.1
H3A411
SOS1
78
LLPS-Lac-0377
ENSLACG00000012177.1
H3AW10
SQSTM1
79
LLPS-Lac-0208
ENSLACG00000013322.1
H3AZR4
SURF6
80
LLPS-Lac-1363
ENSLACG00000003476.1
H3A2N0
SYNGAP1
81
LLPS-Lac-1565
ENSLACG00000018479.1
H3BGL1
TAF15
82
LLPS-Lac-2121
ENSLACG00000017101.1
H3BC22
TARDBP
83
LLPS-Lac-1201
ENSLACG00000017828.2
H3BEG2
TIA1
84
LLPS-Lac-2390
ENSLACG00000011749.1
H3AUM2
TIAL1
85
LLPS-Lac-1331
ENSLACG00000012199.1
H3AW35
TNPO1
86
LLPS-Lac-3159
ENSLACG00000014014.1
H3B1Z4
TP53
87
LLPS-Lac-1162
ENSLACG00000001715.2
H2ZX00
UBXN6
88
LLPS-Lac-2599
ENSLACG00000018213.1
H3BFQ8
XPO1
89
LLPS-Lac-3706
ENSLACG00000016289.1
H3B9D1
ZNF207