Komagataella pastoris      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 32 genes.  Reviewed (0 or Unreviewed (32

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Kop-0574
PAS_chr3_0257
C4R408
ADK1
2
LLPS-Kop-0049
PAS_chr1-3_0142
C4QVC8
LSM4
3
LLPS-Kop-0461
PAS_chr1-1_0232
C4QWH8
PAS_chr1-1_0232
4
LLPS-Kop-0492
PAS_chr1-1_0345
C4QWU8
PAS_chr1-1_0345
5
LLPS-Kop-1026
PAS_chr1-1_0411
C4QX15
PAS_chr1-1_0411
6
LLPS-Kop-0000
PAS_chr1-3_0022
C4QV04
PAS_chr1-3_0022
7
LLPS-Kop-0114
PAS_chr1-3_0237
C4QVM6
PAS_chr1-3_0237
8
LLPS-Kop-0459
PAS_chr1-4_0007
C4QX67
PAS_chr1-4_0007
9
LLPS-Kop-0248
PAS_chr1-4_0100
C4QXF7
PAS_chr1-4_0100
10
LLPS-Kop-0219
PAS_chr1-4_0662
C4QXS1
PAS_chr1-4_0662
11
LLPS-Kop-1053
PAS_chr2-1_0097
C4QZM5
PAS_chr2-1_0097
12
LLPS-Kop-1188
PAS_chr2-1_0468
C4R0S2
PAS_chr2-1_0468
13
LLPS-Kop-0226
PAS_chr2-1_0648
C4R1B8
PAS_chr2-1_0648
14
LLPS-Kop-1219
PAS_chr2-1_0769
C4R1P9
PAS_chr2-1_0769
15
LLPS-Kop-0972
PAS_chr2-1_0855
C4R0X9
PAS_chr2-1_0855
16
LLPS-Kop-1501
PAS_chr2-2_0041
C4R319
PAS_chr2-2_0041
17
LLPS-Kop-0202
PAS_chr2-2_0134
C4R2R7
PAS_chr2-2_0134
18
LLPS-Kop-0504
PAS_chr2-2_0243
C4R2E8
PAS_chr2-2_0243
19
LLPS-Kop-0465
PAS_chr2-2_0378
C4R203
PAS_chr2-2_0378
20
LLPS-Kop-1238
PAS_chr2-2_0385
C4R1Z6
PAS_chr2-2_0385
21
LLPS-Kop-1143
PAS_chr2-2_0432
C4R1V3
PAS_chr2-2_0432
22
LLPS-Kop-0495
PAS_chr3_0148
C4R3P1
PAS_chr3_0148
23
LLPS-Kop-0705
PAS_chr3_0188
C4R3T2
PAS_chr3_0188
24
LLPS-Kop-1164
PAS_chr3_0398
C4R4G0
PAS_chr3_0398
25
LLPS-Kop-0130
PAS_chr3_0568
C4R4Y0
PAS_chr3_0568
26
LLPS-Kop-0120
PAS_chr3_0656
C4R567
PAS_chr3_0656
27
LLPS-Kop-0287
PAS_chr3_0825
C4R5P3
PAS_chr3_0825
28
LLPS-Kop-1097
PAS_chr3_0978
C4R656
PAS_chr3_0978
29
LLPS-Kop-0562
PAS_chr4_0194
C4R744
PAS_chr4_0194
30
LLPS-Kop-0448
PAS_chr4_0288
C4R7F0
PAS_chr4_0288
31
LLPS-Kop-0040
PAS_chr4_0808
C4R903
PAS_chr4_0808
32
LLPS-Kop-0820
PAS_chr4_0814
C4R910
PAS_chr4_0814