Astyanax mexicanus      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 87 genes.  Reviewed (0 or Unreviewed (87

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Asm-0009
ENSAMXG00000009499.2
W5KQE3
2
LLPS-Asm-0038
ENSAMXG00000032960.1
A0A3B1J3E4
3
LLPS-Asm-0042
ENSAMXG00000009842.2
W5KR97
4
LLPS-Asm-0082
ENSAMXG00000037884.1
A0A3B1JNE3
5
LLPS-Asm-0085
ENSAMXG00000003041.2
A0A3B1K216
6
LLPS-Asm-0111
ENSAMXG00000017485.2
A0A3B1K3K4
7
LLPS-Asm-0149
ENSAMXG00000009996.2
W5KRQ1
8
LLPS-Asm-0241
ENSAMXG00000020869.2
A0A3B1IMN5
9
LLPS-Asm-0250
ENSAMXG00000006688.2
A0A3B1JUV7
10
LLPS-Asm-0271
ENSAMXG00000035620.1
A0A3B1K6F5
11
LLPS-Asm-0295
ENSAMXG00000020046.2
A0A3B1J9R7
12
LLPS-Asm-0318
ENSAMXG00000008069.2
A0A3B1JJN6
13
LLPS-Asm-0336
ENSAMXG00000015752.2
A0A3B1INH9
14
LLPS-Asm-0340
ENSAMXG00000037730.1
A0A3B1IV80
15
LLPS-Asm-0344
ENSAMXG00000030819.1
A0A3B1KFC6
16
LLPS-Asm-0350
ENSAMXG00000038511.1
A0A3B1II24
17
LLPS-Asm-0354
ENSAMXG00000030817.1
A0A3B1KD55
18
LLPS-Asm-0406
ENSAMXG00000018462.2
A0A3B1J371
19
LLPS-Asm-0462
ENSAMXG00000020288.2
W5LM42
20
LLPS-Asm-0489
ENSAMXG00000010892.2
W5KUB9
21
LLPS-Asm-0516
ENSAMXG00000020362.2
W5LMB3
22
LLPS-Asm-0517
ENSAMXG00000036881.1
A0A3B1KFJ6
23
LLPS-Asm-0554
ENSAMXG00000014034.2
W5L3N7
24
LLPS-Asm-0577
ENSAMXG00000041598.1
A0A3B1IKI3
25
LLPS-Asm-0599
ENSAMXG00000019677.2
W5LK95
26
LLPS-Asm-0607
ENSAMXG00000021025.2
W5LP82
27
LLPS-Asm-0660
ENSAMXG00000012704.2
W5KZU3
28
LLPS-Asm-0750
ENSAMXG00000008599.2
W5KMP6
29
LLPS-Asm-0786
ENSAMXG00000001381.2
W5K1F4
30
LLPS-Asm-0862
ENSAMXG00000009187.2
W5KPI5
31
LLPS-Asm-0911
ENSAMXG00000030795.1
A0A3B1JA12
32
LLPS-Asm-0927
ENSAMXG00000001495.2
W5K1Q4
33
LLPS-Asm-1096
ENSAMXG00000001589.2
W5K217
34
LLPS-Asm-1164
ENSAMXG00000008707.2
W5KN07
35
LLPS-Asm-1174
ENSAMXG00000015612.2
A0A3B1IPD2
36
LLPS-Asm-1242
ENSAMXG00000024615.2
A0A3B1JIU6
37
LLPS-Asm-1273
ENSAMXG00000019286.2
A0A3B1IRG6
38
LLPS-Asm-1284
ENSAMXG00000009544.2
A0A3B1IRI3
39
LLPS-Asm-1295
ENSAMXG00000004471.2
A0A3B1JST6
40
LLPS-Asm-1298
ENSAMXG00000004497.2
W5KAJ6
41
LLPS-Asm-1326
ENSAMXG00000008454.2
W5KM73
42
LLPS-Asm-1346
ENSAMXG00000006975.2
A0A3B1J6D6
43
LLPS-Asm-1397
ENSAMXG00000006302.2
W5KFV6
44
LLPS-Asm-1400
ENSAMXG00000041903.1
A0A3B1IWI3
45
LLPS-Asm-1410
ENSAMXG00000018871.2
A0A3B1IYJ7
46
LLPS-Asm-1536
ENSAMXG00000012546.2
W5KZ85
47
LLPS-Asm-1540
ENSAMXG00000032883.1
A0A3B1IX29
48
LLPS-Asm-1558
ENSAMXG00000018353.2
A0A3B1JGT6
49
LLPS-Asm-1629
ENSAMXG00000010198.2
W5KSB9
50
LLPS-Asm-1650
ENSAMXG00000021280.2
W5LPS2
51
LLPS-Asm-1656
ENSAMXG00000037402.1
A0A3B1IKH1
52
LLPS-Asm-1662
ENSAMXG00000002931.2
W5K5Y3
53
LLPS-Asm-1690
ENSAMXG00000013366.2
W5L1P1
54
LLPS-Asm-1734
ENSAMXG00000012436.2
W5KYW6
55
LLPS-Asm-1821
ENSAMXG00000014974.2
A0A3B1JNR3
56
LLPS-Asm-1866
ENSAMXG00000011526.2
W5KW74
57
LLPS-Asm-1976
ENSAMXG00000013979.2
A0A3B1ILI2
58
LLPS-Asm-2008
ENSAMXG00000021477.2
W5LQ40
59
LLPS-Asm-2037
ENSAMXG00000002781.2
W5K5L6
60
LLPS-Asm-2054
ENSAMXG00000010374.2
A0A3B1JFX5
61
LLPS-Asm-2113
ENSAMXG00000019553.2
A0A3B1JGQ7
62
LLPS-Asm-2278
ENSAMXG00000019066.2
W5LIH6
63
LLPS-Asm-2359
ENSAMXG00000037761.1
A0A3B1IH92
64
LLPS-Asm-2393
ENSAMXG00000021201.2
A0A3B1K1X9
65
LLPS-Asm-2425
ENSAMXG00000024785.2
A0A3B1JYW4
66
LLPS-Asm-2584
ENSAMXG00000042316.1
A0A3B1IGV8
67
LLPS-Asm-2746
ENSAMXG00000018993.2
A0A3B1JHS3
68
LLPS-Asm-2753
ENSAMXG00000036639.1
A0A3B1J8W0
69
LLPS-Asm-2895
ENSAMXG00000005466.2
W5KDE0
70
LLPS-Asm-2913
ENSAMXG00000010155.2
W5KSB7
71
LLPS-Asm-2924
ENSAMXG00000010288.2
W5KSP0
72
LLPS-Asm-3015
ENSAMXG00000010152.2
W5KSA5
73
LLPS-Asm-3107
ENSAMXG00000043028.1
A0A3B1J8Q7
74
LLPS-Asm-3121
ENSAMXG00000001477.2
W5K1Q0
75
LLPS-Asm-3308
ENSAMXG00000013335.2
W5L1L0
76
LLPS-Asm-3540
ENSAMXG00000005167.2
A0A3B1IBU4
77
LLPS-Asm-3560
ENSAMXG00000008212.2
W5KLH6
78
LLPS-Asm-3681
ENSAMXG00000018423.2
W5LGQ6
79
LLPS-Asm-3690
ENSAMXG00000036979.1
A0A3B1JIH3
80
LLPS-Asm-3999
ENSAMXG00000000904.2
W5K017
81
LLPS-Asm-4087
ENSAMXG00000032407.1
A0A3B1IHW2
82
LLPS-Asm-4143
ENSAMXG00000009680.2
W5KQW1
83
LLPS-Asm-0287
ENSAMXG00000014587.2
A0A3B1KLJ8
AGO2
84
LLPS-Asm-0168
ENSAMXG00000002803.2
W5K5L3
AK2
85
LLPS-Asm-3283
ENSAMXG00000003969.2
W5K8Z2
FLNB
86
LLPS-Asm-3337
ENSAMXG00000016932.2
A0A3B1K237
LSM4
87
LLPS-Asm-1202
ENSAMXG00000031427.1
W5KVZ7
LYZ (1 of many)