Danio rerio      Cajal body


※ Cajal body introduction

    Cajal bodies is a kind of non-membrane-bound nuclear bodies, formation of such sub-organelles usually involves dynamic processes, which can move within the nucleoplasm except when transiently immobilized through interaction with chromatin (1). The Cajal body has been suggested to be associated with telomere maintenance and maturation of the splicing machinery and processing of histone mRNA (2;3), it is rich in ribonucleoprotein (RNP) complexes and characterized by the marker protein coilin that interacts with many factors and thereby serves as a platform for the assembly of Cajal bodies (1). WRAP53β has been demonstrated to be an essential Cajal Body Component, it guides SMN across the cell to Cajal Bodies, and phosphorylation of WRAP53β by ATM promotes its involvement in the DNA damage response (4). besides, Fam118 is a newly identified component of Cajal bodies that is required for Cajal body formation (5). Defects in Cajal body formation are linked to impaired cell proliferation and splicing (6). In fact, Cajal bodies are not essential in telomerase function and telomere elongation ,whereas certain Cajal body factors such as WRAP53β clearly play important roles in telomere homeostasis (1).

References
1. Henriksson, S., & Farnebo, M. (2015) On the road with WRAP53beta: guardian of Cajal bodies and genome integrity. Front Genet, 6, 91. PMID: 25852739
2. Machyna, M., Heyn, P., & Neugebauer, K. M. (2013) Cajal bodies: where form meets function. Wiley Interdiscip Rev RNA, 4(1), 17-34. PMID: 23042601
3. Hutten, S., Chachami, G., Winter, U., Melchior, F., & Lamond, A. I. (2014) A role for the Cajal-body-associated SUMO isopeptidase USPL1 in snRNA transcription mediated by RNA polymerase II. J. Cell. Sci., 127(Pt 5), 1065-1078. PMID: 24413172
4. Coucoravas, C., Dhanjal, S., Henriksson, S., Bohm, S., & Farnebo, M. (2017) Phosphorylation of the Cajal body protein WRAP53beta by ATM promotes its involvement in the DNA damage response. RNA Biol., 14(6), 804-813. PMID: 27715493
5. Li, Y., Fong, K. W., Tang, M., Han, X., Gong, Z., Ma, W, Chen, J. (2014) Fam118B, a newly identified component of Cajal bodies, is required for Cajal body formation, snRNP biogenesis and cell viability. J. Cell Sci., 127(Pt 9), 2029-2039. PMID:24569877
6. Lemm, I., Girard, C., Kuhn, A. N., Watkins, N. J., Schneider, M., Bordonne, R., & Luhrmann, R. (2006) Ongoing U snRNP biogenesis is required for the integrity of Cajal bodies. Mol. Biol. Cell, 17(7), 3221-3231. PMID:16687569


There are 39 genes.  Reviewed (1 or Unreviewed (38

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Dar-0001
ENSDARG00000053912.5
Q7ZTZ4
fbl
2
LLPS-Dar-0444
ENSDARG00000004452.10
3
LLPS-Dar-0086
ENSDARG00000022718.10
F1QD18
casp8ap2
4
LLPS-Dar-0376
ENSDARG00000087554.3
Q7T3L7
cdk1
5
LLPS-Dar-2141
ENSDARG00000103672.2
Q566W6
cirbpa
6
LLPS-Dar-4188
ENSDARG00000040070.7
B0S7K8
coil
7
LLPS-Dar-0883
ENSDARG00000104609.3
A0A0R4IPF2
crebbpa
8
LLPS-Dar-0359
ENSDARG00000061204.9
P0C218
ddx20
9
LLPS-Dar-0079
ENSDARG00000078983.6
E7FEK3
fam118b
10
LLPS-Dar-1673
ENSDARG00000041631.7
Q1LX81
fam192a
11
LLPS-Dar-3762
ENSDARG00000032129.9
Q5PNQ6
gtf2f1
12
LLPS-Dar-0748
ENSDARG00000024561.10
B8JIY2
nolc1
13
LLPS-Dar-0766
ENSDARG00000012820.12
Q6DRE5
nop56
14
LLPS-Dar-0994
ENSDARG00000055548.8
A0A0R4IH22
npat
15
LLPS-Dar-2335
ENSDARG00000069945.6
E7F2G6
p2ry12
16
LLPS-Dar-1598
ENSDARG00000017423.12
A2RRV3
patl1
17
LLPS-Dar-0903
ENSDARG00000098375.3
A0A0R4I9V4
polr1a
18
LLPS-Dar-3689
ENSDARG00000012234.10
A0A2R8QBI3
psme3
19
LLPS-Dar-1168
ENSDARG00000002591.10
Q8AWW7
ruvbl1
20
LLPS-Dar-1958
ENSDARG00000055639.5
P83571
ruvbl2
21
LLPS-Dar-1482
ENSDARG00000008032.11
B3DJT0
sart3
22
LLPS-Dar-2283
ENSDARG00000058257.4
P59889
slc39a1
23
LLPS-Dar-1484
ENSDARG00000018494.7
Q9W6S8
smn1
24
LLPS-Dar-0886
ENSDARG00000024651.8
F1R300
snrpa1
25
LLPS-Dar-3982
ENSDARG00000039424.6
R4GDR2
snrpb2
26
LLPS-Dar-1547
ENSDARG00000011648.10
Q8JHH1
snrpd1
27
LLPS-Dar-2215
ENSDARG00000033175.5
Q7ZUG0
snrpe
28
LLPS-Dar-0747
ENSDARG00000099667.2
F1QPY7
snrpg
29
LLPS-Dar-2183
ENSDARG00000010563.10
Q5BL35
spopla
30
LLPS-Dar-0335
ENSDARG00000044267.6
Q7SZR5
sumo1
31
LLPS-Dar-0907
ENSDARG00000042637.10
F1QE52
tert
32
LLPS-Dar-0675
ENSDARG00000077544.5
B8A5U4
toe1
33
LLPS-Dar-3199
ENSDARG00000035066.9
F1QZ83
ubtf
34
LLPS-Dar-2113
ENSDARG00000034825.6
Q6DRC5
uspl1
35
LLPS-Dar-2615
ENSDARG00000018006.10
Q7ZUS1
vrk1
36
LLPS-Dar-0076
ENSDARG00000086150.4
E7F3D5
wrap53
37
LLPS-Dar-0250
ENSDARG00000063229.8
A0A2R8RNP8
xpo1b
38
LLPS-Dar-2199
ENSDARG00000027403.8
Q7SXW2
zgpat
39
LLPS-Dar-2891
ENSDARG00000025346.9
A0A2R8QQK7
znf277